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BaseInfo

ncRNA ID	novel_ath_miR21
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr3:13377008-13377120 [+]
Reference genome	TAIR10
Source	SRR1560119;SRR1560124;SRR1560125
Length	22
Mature sequence(if miRNA)	92 - GCGGCGACGAAACGAACAGACU - 113
Stem-loop(if miRNA)	--           A  G     ------AA     A    ---CA    C        C G   UCUGUUCGUUU GU GCCGC        GCGGC GCGG     GCGG UGCGGCAA G U   ||||||||||| || |||||        ||||| ||||     |||| |||||||| |   AGACAAGCAAA CA CGGCG        CGCCG CGCC     CGUU ACGCCGUU C A UC           G  G     CCCAUAAA     A    AUCUG    C        A A
Stem-loop sequence	UCUGUUCGUUUAGUGGCCGCAAGCGGCAGCGGCAGCGGCUGCGGCAACGGUAACAUUGCCGCACUUGCGUCUACCGCAGCCGCAAAUACCCGCGGCGACGAAACGAACAGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_128774.4	ncRNA:22   UCAGACAAGCAAAGCAGCGGCG   1   |||||||||||||||||||||| targets:1252   AGUCUGUUCGUUUCGUCGCCGC   1273 Target Full Sequence	0.0	Arabidopsis thaliana Haloacid dehalogenase-like hydrolase (HAD) superfamily protein mRNA	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(AT2G32150)	coding protein	psRNATarget
NM_102044.3	ncRNA:22   UCAGACAAGCAAAGCAGCGGCG   1   *|*|*|||||||||||||=||| targets:156   UGGCCGUUCGUUUCGUCGUCGC   177 Target Full Sequence	2.5	Arabidopsis thaliana transmembrane protein mRNA	transmembrane protein(AT1G21950)	coding protein	psRNATarget
AY800591.1	ncRNA:22   UCAGACAAGCAAAGCAGCGGCG   1   *|*|*|||||||||||||=||| targets:156   UGGCCGUUCGUUUCGUCGUCGC   177 Target Full Sequence	2.5	Arabidopsis thaliana clone H0000001130 hypothetical protein (AT1G21950) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001161133.2	ncRNA:22   UC--AG---ACAAGCAAAGCAGCGGCG   1   ||--||---|||||||||||||||||| targets:320   AGGAUCCAUUGUUCGUUUCGUCGCCGC   346 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT3G11165)	coding protein	psRNATarget
NM_001337915.1	ncRNA:22   UC--AG---ACAAGCAAAGCAGCGGCG   1   ||--||---|||||||||||||||||| targets:361   AGGAUCCAUUGUUCGUUUCGUCGCCGC   387 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT3G11165)	coding protein	psRNATarget