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BaseInfo

ncRNA ID novel_ath_miR20
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:16723352-16723418 [+]
Reference genome TAIR10
Source SRR1560119
Length 24
Mature sequence(if miRNA) 1 - CCAUUUUAAAACUCUUGUGAACCU - 24
Stem-loop(if miRNA) --  A   U              C    ACAAAA
  CC UUU AAAACUCUUGUGAA CUUU      U
  || ||| |||||||||||||| ||||
  GG AAA UUUUGAGAACAUUU GAAA      A
UA  -   U              A    ACUUUU
Stem-loop sequence CCAUUUUAAAACUCUUGUGAACCUUUACAAAAUAUUUUCAAAAGAUUUACAAGAGUUUUUAAAGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001334991.1
ncRNA:24   UCCAAGUGUUCUCAAAAUUUUACC   1
  *|*||||==|||||||||||||||
targets:104   UGAUUCAUGAGAGUUUUAAAAUGG   127

2.0 Arabidopsis thaliana hypothetical protein partial mRNA hypothetical protein(AT1G80525) coding protein psRNATarget