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BaseInfo

ncRNA ID	novel_ath_miR13
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr3:9744115-9744251 [-]
Reference genome	TAIR10
Source	SRR1560119;SRR3144591;SRR3178439;ERR1337931;ERR654974;SRR1163504;SRR1163720;SRR1265989;SRR1265994
Length	21
Mature sequence(if miRNA)	117 - AGUUAUCAGAUAUGUCCAAGC - 137
Stem-loop(if miRNA)	--                 A           U     --        CAUCAAA   -    CC    GG   AGUUAUCAGAUAUGUCC AGCUCCAAGCU ACGAU  AUAGCUUC       AUG GAGU  AUAA  U   ||||||||||||||||| ||||||||||| |||||  ||||||||       ||| ||||  ||||  A   UCAAUAGUCUAUACAGG UCGAGGUUCGA UGUUA  UAUCGGAG       UAC CUCA  UAUU  A AG                 G           -     CG        AUAUAUG   U    CU    GA
Stem-loop sequence	AGUUAUCAGAUAUGUCCAAGCUCCAAGCUUACGAUAUAGCUUCCAUCAAAAUGGAGUCCAUAAGGUAAAGUUAUUCACUCUCAUGUAUAUAGAGGCUAUGCAUUGUAGCUUGGAGCUGGGACAUAUCUGAUAACUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX832659.1	ncRNA:21   CGAACCUGUAUAGACUAUUGA   1   *||||||=|||||||||*||| targets:175   UCUUGGAUAUAUCUGAUCACU   195 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZE01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT002664.1	ncRNA:21   CGAACCUGUAUAGACUAUUGA   1   *||||||=|||||||||*||| targets:1667   UCUUGGAUAUAUCUGAUCACU   1687 Target Full Sequence	2.5	Arabidopsis thaliana At5g49810/K21G20_2 gene, complete cds	NA	coding protein	psRNATarget
AY094459.1	ncRNA:21   CGAACCUGUAUAGACUAUUGA   1   *||||||=|||||||||*||| targets:1742   UCUUGGAUAUAUCUGAUCACU   1762 Target Full Sequence	2.5	Arabidopsis thaliana AT5g49810/K21G20_2 mRNA, complete cds	NA	coding protein	psRNATarget
AF137380.1	ncRNA:21   CGAACCUGUAUAGACUAUUGA   1   *||||||=|||||||||*||| targets:1736   UCUUGGAUAUAUCUGAUCACU   1756 Target Full Sequence	2.5	Arabidopsis thaliana methionine S-methyltransferase mRNA, complete cds	NA	coding protein	psRNATarget
NM_124359.4	ncRNA:21   CGAACCUGUAUAGACUAUUGA   1   *||||||=|||||||||*||| targets:1792   UCUUGGAUAUAUCUGAUCACU   1812 Target Full Sequence	2.5	Arabidopsis thaliana methionine S-methyltransferase (MMT), mRNA	methionine S-methyltransferase(MMT)	coding protein	psRNATarget