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BaseInfo

ncRNA ID ath-miRf10437-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - GAAUCCGGCGAAUUUUCAGC - NA
Stem-loop(if miRNA)   UUG    -A      --           ----     -      G
GG   UGGA  CUGAAA  UCGCUGGAUUU    UGGGG UUUUCU G
||   ||||  ||||||  |||||||||||    ||||| ||||||
CC   ACCU  GACUUU  AGCGGCCUAAG    ACCUC GGGAGA U
  UAA    CC      UA           UAGG     U      A
Stem-loop sequence GGUUGUGGAACUGAAAUCGCUGGAUUUUGGGGUUUUCUGGUAAGAGGGUCUCCAGGAUGAAUCCGGCGAAUUUUCAGCCUCCAAAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_105083.1
ncRNA:20   CGACUUUUAAGCGGCCUAAG   1
  |*||=|||||||||||||||
targets:393   GAUGGAAAUUCGCCGGAUUC   412

2.0 Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing protein partial mRNA pentatricopeptide (PPR) repeat-containing protein(AT1G64100) coding protein psRNATarget
DQ446393.1
ncRNA:20   CGACUUUUAAGCGGCCUAAG   1
  |*||=|||||||||||||||
targets:393   GAUGGAAAUUCGCCGGAUUC   412

2.0 Arabidopsis thaliana clone pENTR221-At1g64100 pentatricopeptide repeat-containing protein (At1g64100) mRNA, complete cds NA coding protein psRNATarget
NM_001084301.1
ncRNA:20   CGACUUUUAAGCGGCCUAAG   1
  |*||=|||||||||||||||
targets:393   GAUGGAAAUUCGCCGGAUUC   412

2.0 Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing protein partial mRNA pentatricopeptide (PPR) repeat-containing protein(AT1G64100) coding protein psRNATarget
NM_001334145.1
ncRNA:20   CGACUUUUAAGCGGCCUAAG   1
  |*||=|||||||||||||||
targets:393   GAUGGAAAUUCGCCGGAUUC   412

2.0 Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing protein partial mRNA pentatricopeptide (PPR) repeat-containing protein(AT1G64100) coding protein psRNATarget
NM_119679.2
ncRNA:20   CGACUUUUAAGCGGCCUAAG   1
  |*|||||||||||||||*||
targets:147   GGUGAAAAUUCGCCGGAAUC   166

2.5 Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein mRNA Tetratricopeptide repeat (TPR)-like superfamily protein(AT4G35130) coding protein psRNATarget