ncRNA ID | novel_ath_miR10 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr3:13377005-13377123 [+] |
Reference genome | TAIR10 |
Source | SRR1560118 |
Length | 24 |
Mature sequence(if miRNA) | 96 - CGGCGACGAAACGAACAGACUAAU - 119 |
Stem-loop(if miRNA) |
--              A  G     ------AA     A    ---CA    C        C G   UAGUCUGUUCGUUU GU GCCGC        GCGGC GCGG     GCGG UGCGGCAA G U   |||||||||||||| || |||||        ||||| ||||     |||| |||||||| |   AUCAGACAAGCAAA CA CGGCG        CGCCG CGCC     CGUU ACGCCGUU C A UA              G  G     CCCAUAAA     A    AUCUG    C        A A |
Stem-loop sequence | UAGUCUGUUCGUUUAGUGGCCGCAAGCGGCAGCGGCAGCGGCUGCGGCAACGGUAACAUUGCCGCACUUGCGUCUACCGCAGCCGCAAAUACCCGCGGCGACGAAACGAACAGACUAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_128774.4 |
|
0.0 | Arabidopsis thaliana Haloacid dehalogenase-like hydrolase (HAD) superfamily protein mRNA | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(AT2G32150) | coding protein | psRNATarget |