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BaseInfo

ncRNA ID novel_ath_miR10
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:13377005-13377123 [+]
Reference genome TAIR10
Source SRR1560118
Length 24
Mature sequence(if miRNA) 96 - CGGCGACGAAACGAACAGACUAAU - 119
Stem-loop(if miRNA) --              A  G     ------AA     A    ---CA    C        C G
  UAGUCUGUUCGUUU GU GCCGC        GCGGC GCGG     GCGG UGCGGCAA G U
  |||||||||||||| || |||||        ||||| ||||     |||| |||||||| |
  AUCAGACAAGCAAA CA CGGCG        CGCCG CGCC     CGUU ACGCCGUU C A
UA              G  G     CCCAUAAA     A    AUCUG    C        A A
Stem-loop sequence UAGUCUGUUCGUUUAGUGGCCGCAAGCGGCAGCGGCAGCGGCUGCGGCAACGGUAACAUUGCCGCACUUGCGUCUACCGCAGCCGCAAAUACCCGCGGCGACGAAACGAACAGACUAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_128774.4
ncRNA:24   UAAUCAGACAAGCAAAGCAGCGGC   1
  ||||||||||||||||||||||||
targets:1249   AUUAGUCUGUUCGUUUCGUCGCCG   1272

0.0 Arabidopsis thaliana Haloacid dehalogenase-like hydrolase (HAD) superfamily protein mRNA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(AT2G32150) coding protein psRNATarget