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BaseInfo

ncRNA ID	novel_ath_miR8
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:28196389-28196501 [-]
Reference genome	TAIR10
Source	SRR1560118;SRR1560126;SRR1560128;SRR1569251;SRR2145250;SRR1266870
Length	21
Mature sequence(if miRNA)	93 - CAGUUCGAUACUUGUAAAAAG - 113
Stem-loop(if miRNA)	--     C   --  U           --U         CAAA    UUACAAAA    UU   CAGUU GAU  AC UGUAAAAAGUG   GAAGCUAUC    UCCA        CUGU  C   ||||| |||  || |||||||||||   |||||||||    ||||        ||||   GUCAG CUA  UG ACGUUUUUUGC   UUUCGAUAG    AGGU        GGCA  A UA     U   GU  U           UCU         ----    -UUUUAGC    UU
Stem-loop sequence	CAGUUCGAUACUUGUAAAAAGUGUGAAGCUAUCCAAAUCCAUUACAAAACUGUUUCAUUACGGCGAUUUUUGGAGAUAGCUUUUCUCGUUUUUUGCAUGUUGAUCUGACUGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY143943.1	ncRNA:21   GAAAAAUGUUCAUAGCUUGAC   1   **|||*|||||*||||||||| targets:1298   ACUUUGACAAGGAUCGAACUG   1318 Target Full Sequence	2.5	Arabidopsis thaliana At2g25560/F13B15.22 mRNA, complete cds	NA	coding protein	psRNATarget
AY096664.1	ncRNA:21   GAAAAAUGUUCAUAGCUUGAC   1   **|||*|||||*||||||||| targets:1298   ACUUUGACAAGGAUCGAACUG   1318 Target Full Sequence	2.5	Arabidopsis thaliana putative DnaJ protein (At2g25560) mRNA, complete cds	NA	coding protein	psRNATarget
AF367256.1	ncRNA:21   GAAAAAUGUUCAUAGCUUGAC   1   **|||*|||||*||||||||| targets:1613   ACUUUGACAAGGAUCGAACUG   1633 Target Full Sequence	2.5	Arabidopsis thaliana At2g25560/F13B15.22 mRNA, complete cds	NA	coding protein	psRNATarget
AY072085.1	ncRNA:21   GAAAAAUGUUCAUAGCUUGAC   1   **|||*|||||*||||||||| targets:1731   ACUUUGACAAGGAUCGAACUG   1751 Target Full Sequence	2.5	Arabidopsis thaliana putative DnaJ protein (At2g25560) mRNA, complete cds	NA	coding protein	psRNATarget
NM_128113.3	ncRNA:21   GAAAAAUGUUCAUAGCUUGAC   1   **|||*|||||*||||||||| targets:1850   ACUUUGACAAGGAUCGAACUG   1870 Target Full Sequence	2.5	Arabidopsis thaliana DNAJ heat shock N-terminal domain-containing protein mRNA	DNAJ heat shock N-terminal domain-containing protein(AT2G25560)	coding protein	psRNATarget
NM_127347.6	ncRNA:21   GAAAAAUGUUCAUAGCUUGAC   1   **|*|||||||||||*||||| targets:10441   GCUGUUACAAGUAUCCAACUG   10461 Target Full Sequence	2.5	Arabidopsis thaliana Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein mRNA	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein(AT2G17930)	coding protein	psRNATarget
NM_128830.4	ncRNA:21   GAAAAAUGUUCAUAGCUUGAC   1   ****||||||||||||||||* targets:2043   GAAGUUACAAGUAUCGAACUU   2063 Target Full Sequence	3.0	Arabidopsis thaliana Cyclin-dependent kinase inhibitor family protein mRNA	Cyclin-dependent kinase inhibitor family protein(AT2G32710)	coding protein	psRNATarget