Search result

BaseInfo

ncRNA ID novel_ahy_miR1178
Species Arachis hypogaea
Class miRNA
Genome position Araip.B02:108097641-108097776 [+]
Reference genome Araip_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - AAAACUCAGAUGCAGUCGACUUCA - 24
Stem-loop(if miRNA) --AA       A                                   C     A    UUU     AU
    AACUCAG UGCAGUCGACUUCACGUGAAGUUGAUAGUUGAGAG CGUUA AUGG   GAUUG  U
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||   |||||  U
    UUGAGUC ACGUCAGCUGAAGUGCACUUCAACUAUCAACUCUC GCAAU UACU   UUAAU  G
AACA       C                                   A     C    -UU     CA
Stem-loop sequence AAAACUCAGAUGCAGUCGACUUCACGUGAAGUUGAUAGUUGAGAGCCGUUAAAUGGUUUGAUUGAUUUGACUAAUUUUUCAUCUAACGACUCUCAACUAUCAACUUCACGUGAAGUCGACUGCACCUGAGUUACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JR584453.1
ncRNA:24   ACUUCAGCUGACGUAGACUCAAAA   1
  ||||*|||||*|||||||||||||
targets:29   UGAAUUCGACGGCAUCUGAGUUUU   52

1.0 TSA: Arachis hypogaea Ahy.Unigene50333 mRNA sequence NA coding protein psRNATarget
JR560456.1
ncRNA:24   ACUUCAGCUGACGUAGACUCAAAA   1
  |*||||||||||||*|||||||||
targets:552   UAAAGUCGACUGCACCUGAGUUUU   575

1.5 TSA: Arachis hypogaea Ahy.Unigene20432 mRNA sequence NA coding protein psRNATarget
JR574947.1
ncRNA:24   ACUUCAGCUGACGUAGACUCAAAA   1
  |**|||||||||||*|||||||||
targets:155   UACAGUCGACUGCACCUGAGUUUU   178

1.5 TSA: Arachis hypogaea Ahy.Unigene37984 mRNA sequence NA coding protein psRNATarget
JR559052.1
ncRNA:24   ACUUCAGCUGACGUAGACUCAAAA   1
  ||||||||||||||*||||||||*
targets:75   UGAAGUCGACUGCACCUGAGUUUC   98

2.5 TSA: Arachis hypogaea Ahy.Unigene18963 mRNA sequence NA coding protein psRNATarget