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BaseInfo

ncRNA ID novel_ahy_miR1171
Species Arachis hypogaea
Class miRNA
Genome position Araip.B10:11743399-11743582 [+]
Reference genome Araip_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 161 - AUACUGUAAUACACUUCAAAUGUC - 184
Stem-loop(if miRNA) --      --     A     U    GUAGAUUUUGUAG  A        --A   A  GAG  GUAUUGCAACAAGUGGGGGCGUGUUGGACAGGUGGCAAC
  UAUUUG  GUGUA UUAUA GUAU             GU GGAAGUCA   CAC UG   GC                                       A
  ||||||  ||||| ||||| ||||             || ||||||||   ||| ||   ||                                       U
  GUAAAC  CACAU AAUGU CAUA             CA CCUUCAGU   UUG UA   CG                                       U
CU      UU     -     -    ------------A  -        AAG   -  ---  GGGGAUAUACAAAGUUGUGCGGGGAGUGCACAACCGGUU
Stem-loop sequence UAUUUGGUGUAAUUAUAUGUAUGUAGAUUUUGUAGGUAGGAAGUCAACACAUGGAGGCGUAUUGCAACAAGUGGGGGCGUGUUGGACAGGUGGCAACAUUUUGGCCAACACGUGAGGGGCGUGUUGAAACAUAUAGGGGGCAUGUUGAAUGACUUCCACAAUACUGUAAUACACUUCAAAUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GAER01007072.1
ncRNA:24   CUGUAAACUUCACAUAAUGUCAUA   1
  ||||||||||||||*|||||||||
targets:50   GACAUUUGAAGUGUUUUACAGUAU   73

1.5 TSA: Arachis hypogaea Unigene7079 mRNA sequence NA coding protein psRNATarget