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BaseInfo

ncRNA ID ath-miRf10432-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - AGGGUUUUGGCUCCGGAGGU - NA
Stem-loop(if miRNA)        G         --        -            AAAGGAGUUUCUACAGCUCAAGUGACGAGGAAUAGGGA
CCGAAGC AUUUUCGGA  CGAAACCC GCUUGGAGAUUC                                      U
||||||| |||||||||  |||||||| ||||||||||||
GGUUUCG UGGAGGCCU  GUUUUGGG UCAUUCUUCUUC                                      U
       G         CG        A            CUAUUUUGACAGGGAACGAAGAGAAGGCUCUACGGAAA
Stem-loop sequence CCGAAGCGAUUUUCGGACGAAACCCGCUUGGAGAUUCAAAGGAGUUUCUACAGCUCAAGUGACGAGGAAUAGGGAUUAAAGGCAUCUCGGAAGAGAAGCAAGGGACAGUUUUAUCCUUCUUCUUACUAGGGUUUUGGCUCCGGAGGUGGCUUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT029348.1
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  ||||||||||||||||||||
targets:110   ACCUCCGGAGCCAAAACCCU   129

0.0 Arabidopsis thaliana At2g28660 mRNA, complete cds NA coding protein psRNATarget
AY303948.1
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  ||||||||||||||||||||
targets:110   ACCUCCGGAGCCAAAACCCU   129

0.0 Arabidopsis thaliana putative chloroplast-targeted copper chaperone mRNA, complete cds; nuclear gene for chloroplast product NA coding protein psRNATarget
NM_128427.3
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  ||||||||||||||||||||
targets:274   ACCUCCGGAGCCAAAACCCU   293

0.0 Arabidopsis thaliana Chloroplast-targeted copper chaperone protein mRNA Chloroplast-targeted copper chaperone protein(AT2G28660) coding protein psRNATarget
BT020300.1
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  ||||||||||||||||||=*
targets:345   ACCUCCGGAGCCAAAACCUG   364

2.5 Arabidopsis thaliana At5g48290 gene, complete cds NA coding protein psRNATarget
BT020469.1
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  ||||||||||||||||||=*
targets:363   ACCUCCGGAGCCAAAACCUG   382

2.5 Arabidopsis thaliana At5g48290 gene, complete cds NA coding protein psRNATarget
BT002909.1
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  ||||||||||||||||||=*
targets:393   ACCUCCGGAGCCAAAACCUG   412

2.5 Arabidopsis thaliana clone RAFL14-78-B01 (R20090) unknown protein (At5g48290) mRNA, complete cds NA coding protein psRNATarget
NM_124204.4
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  ||||||||||||||||||=*
targets:550   ACCUCCGGAGCCAAAACCUG   569

2.5 Arabidopsis thaliana Heavy metal transport/detoxification superfamily protein mRNA Heavy metal transport/detoxification superfamily protein(AT5G48290) coding protein psRNATarget
NM_001344765.1
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  ||||||||||||||||||=*
targets:541   ACCUCCGGAGCCAAAACCUG   560

2.5 Arabidopsis thaliana Heavy metal transport/detoxification superfamily protein mRNA Heavy metal transport/detoxification superfamily protein(AT5G48290) coding protein psRNATarget
NM_001036955.2
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  ||||||||||||||||||=*
targets:554   ACCUCCGGAGCCAAAACCUG   573

2.5 Arabidopsis thaliana Heavy metal transport/detoxification superfamily protein mRNA Heavy metal transport/detoxification superfamily protein(AT5G48290) coding protein psRNATarget
BT002989.1
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  |||*|||||||*||||||||
targets:97   ACCGCCGGAGCAAAAACCCU   116

2.5 Arabidopsis thaliana clone RAFL15-05-O22 (R20507) unknown protein (At1g51745) mRNA, complete cds NA coding protein psRNATarget
NM_001036095.4
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  |||*|||||||*||||||||
targets:97   ACCGCCGGAGCAAAAACCCU   116

2.5 Arabidopsis thaliana Tudor/PWWP/MBT superfamily protein mRNA Tudor/PWWP/MBT superfamily protein(AT1G51745) coding protein psRNATarget
NM_001333500.1
ncRNA:20   UGGAGGCCUCGGUUUUGGGA   1
  |||*|||||||*||||||||
targets:154   ACCGCCGGAGCAAAAACCCU   173

2.5 Arabidopsis thaliana Tudor/PWWP/MBT superfamily protein mRNA Tudor/PWWP/MBT superfamily protein(AT1G51745) coding protein psRNATarget
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