Search result

BaseInfo

ncRNA ID ath-miRf10426-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - CUACUCGACCUCUUGGUCGAGUGGU - NA
Stem-loop(if miRNA)     UG --         UC            U   -G G   UGGUGAU U CU         CU
AUGA  G  CACUCGACC  GGGGUCGAGUGG GAG  U AAG       G G  CUACUCGAC  G
||||  |  |||||||||  |||||||||||| |||  | |||       | |  |||||||||
UACU  U  GUGAGCUGG  CUCCAGCUCAUC CUC  A UUC       C C  GGUGAGCUG  G
    GU UG         UU            -   GA G   UAGAGUU U -U         UU
Stem-loop sequence AUGAUGGCACUCGACCUCGGGGUCGAGUGGUGAGGUGAAGUGGUGAUGUGCUCUACUCGACCUGGUUGUCGAGUGGUCUCUUGAGAUCUUGAAGCUCCUACUCGACCUCUUGGUCGAGUGGUUUGUCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY227642.1
ncRNA:25   UGGUGAGCUGGUUCUCCAGCUCAUC   1
  |||||||||||*|||||||||||||
targets:762   ACCACUCGACCCAGAGGUCGAGUAG   786

1.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:25   UGGUGAGCUGGUUCUCCAGCUCAUC   1
  ||||||||||||*||||||||||||
targets:1525   ACCACUCGACCACGAGGUCGAGUAG   1549

1.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
EF183194.1
ncRNA:25   UG-GUGAGCUGGUUCUCCAGCUCAUC   1
  ||-|||||*||||||||||||||||*
targets:573   ACUCACUCUACCAAGAGGUCGAGUAU   598

2.0 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:25   UGGUGAGCUGGUUCUCCAGCUCAUC   1
  *=|||||*|||*||||||||||||*
targets:925   CUCACUCUACCUAGAGGUCGAGUAU   949

3.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget