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BaseInfo

ncRNA ID ath-miR161.2
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:17825685-17825857 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 38 - UCAAUGCAUUGAAAGUGACUA - 58
Stem-loop(if miRNA) U    GA    GG      AC   UUUAU     C   C      U            C         CC    UUUU     ----      
 GCUU  UCUC  UUUUUG  CAG     UGCGU GAU AAUGCA UGAAAGUGACUA AUCGGGGUU  GAUU    UUGUU    CUUCAUA
 ||||  ||||  ||||||  |||     ||||| ||| |||||| |||||||||||| |||||||||  ||||    |||||    ||||||U
 CGAA  AGGG  AAAAAU  GUU     ACGUA CUA UUACGU ACUUUCACUGAU UGGUCCCAA  CUAA    GACAA    GAAGUAG
A    -A    AG      --   ----U     A   A      C            U         --    ---U     AGGC      
Stem-loop sequence UGCUUGAUCUCGGUUUUUGACCAGUUUAUUGCGUCGAUCAAUGCAUUGAAAGUGACUACAUCGGGGUUCCGAUUUUUUUUGUUCUUCAUAUGAUGAAGCGGAAACAGUAAUCAACCCUGGUUUAGUCACUUUCACUGCAUUAAUCAAUGCAUUUGUAAAAAGAGGGAAAAGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_105012.3
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |||||||*|||||||||||||
targets:799   UAGUCACGUUCAAUGCAUUGA   819

1.0 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein partial mRNA Pentatricopeptide repeat (PPR) superfamily protein(AT1G63330) coding protein psRNATarget
NM_001344391.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  ||*||||||||||||||||||
targets:630   UAAUCACUUUCAAUGCAUUGA   650

1.0 Arabidopsis thaliana Pentatricopeptide repeat (PPR-like) superfamily protein mRNA Pentatricopeptide repeat (PPR-like) superfamily protein(AT5G41170) coding protein psRNATarget
NM_001334080.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |||||||*|||||||||||||
targets:764   UAGUCACGUUCAAUGCAUUGA   784

1.0 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein partial mRNA Pentatricopeptide repeat (PPR) superfamily protein(AT1G63330) coding protein psRNATarget
BT023465.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  ||*||||||||||||||||||
targets:771   UAAUCACUUUCAAUGCAUUGA   791

1.0 Arabidopsis thaliana At5g41170 gene, complete cds NA coding protein psRNATarget
NM_001334079.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |||||||*|||||||||||||
targets:764   UAGUCACGUUCAAUGCAUUGA   784

1.0 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein partial mRNA Pentatricopeptide repeat (PPR) superfamily protein(AT1G63330) coding protein psRNATarget
NM_001334041.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |||||||*|||||||||||||
targets:1039   UAGUCACGUUCAAUGCAUUGA   1059

1.0 Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing protein partial mRNA pentatricopeptide (PPR) repeat-containing protein(AT1G62590) coding protein psRNATarget
NM_001344390.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  ||*||||||||||||||||||
targets:881   UAAUCACUUUCAAUGCAUUGA   901

1.0 Arabidopsis thaliana Pentatricopeptide repeat (PPR-like) superfamily protein mRNA Pentatricopeptide repeat (PPR-like) superfamily protein(AT5G41170) coding protein psRNATarget
NM_123482.3
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  ||*||||||||||||||||||
targets:881   UAAUCACUUUCAAUGCAUUGA   901

1.0 Arabidopsis thaliana Pentatricopeptide repeat (PPR-like) superfamily protein mRNA Pentatricopeptide repeat (PPR-like) superfamily protein(AT5G41170) coding protein psRNATarget
BX832046.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  ||*||||||||||||||||||
targets:881   UAAUCACUUUCAAUGCAUUGA   901

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH48ZF12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY136399.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |||||||*|||||||||||||
targets:1038   UAGUCACGUUCAAUGCAUUGA   1058

1.0 Arabidopsis thaliana putative membrane-associated salt-inducible protein (At1g62590) mRNA, complete cds NA coding protein psRNATarget
NM_104937.3
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |||||||*|||||||||||||
targets:1039   UAGUCACGUUCAAUGCAUUGA   1059

1.0 Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing protein mRNA pentatricopeptide (PPR) repeat-containing protein(AT1G62590) coding protein psRNATarget
AK221654.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |||||||*|||||||||||||
targets:1038   UAGUCACGUUCAAUGCAUUGA   1058

1.0 Arabidopsis thaliana mRNA for putative membrane-associated salt-inducible protein, complete cds, clone: RAFL09-42-P03 NA coding protein psRNATarget
BT000997.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||||||||||||||
targets:983   UUGUUACUUUCAAUGCAUUGA   1003

1.0 Arabidopsis thaliana clone U11067 unknown protein (At1g63150) mRNA, complete cds NA coding protein psRNATarget
AY056252.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||||||||||||||
targets:986   UUGUUACUUUCAAUGCAUUGA   1006

1.0 Arabidopsis thaliana unknown protein (At1g63150) mRNA, complete cds NA coding protein psRNATarget
NM_001334070.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||||||||||||||
targets:1088   UUGUUACUUUCAAUGCAUUGA   1108

1.0 Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein mRNA Tetratricopeptide repeat (TPR)-like superfamily protein(AT1G63150) coding protein psRNATarget
NM_104993.2
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||||||||||||||
targets:1088   UUGUUACUUUCAAUGCAUUGA   1108

1.0 Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein mRNA Tetratricopeptide repeat (TPR)-like superfamily protein(AT1G63150) coding protein psRNATarget
NM_105019.2
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |||||||||||||*|||||||
targets:1131   UAGUCACUUUCAACGCAUUGA   1151

1.5 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein mRNA Pentatricopeptide repeat (PPR) superfamily protein(AT1G63400) coding protein psRNATarget
AK228697.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  ||*||||||*|||||||||||
targets:1197   UAAUCACUUACAAUGCAUUGA   1217

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-05-C21 NA coding protein psRNATarget
NM_001345698.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  ||*||||||*|||||||||||
targets:1232   UAAUCACUUACAAUGCAUUGA   1252

2.5 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein mRNA Pentatricopeptide repeat (PPR) superfamily protein(AT5G65560) coding protein psRNATarget
NM_125954.6
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  ||*||||||*|||||||||||
targets:1232   UAAUCACUUACAAUGCAUUGA   1252

2.5 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein mRNA Pentatricopeptide repeat (PPR) superfamily protein(AT5G65560) coding protein psRNATarget
NM_001345697.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  ||*||||||*|||||||||||
targets:1232   UAAUCACUUACAAUGCAUUGA   1252

2.5 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein mRNA Pentatricopeptide repeat (PPR) superfamily protein(AT5G65560) coding protein psRNATarget
BT028924.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||*|||||||=||||||||
targets:437   UUGUAACUUUCAGUGCAUUGA   457

2.5 Arabidopsis thaliana At1g63230 mRNA, complete cds NA coding protein psRNATarget
BX813471.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||*|||||||=||||||||
targets:927   UUGUAACUUUCAGUGCAUUGA   947

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB19ZE12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_105002.3
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||*|||||||=||||||||
targets:1021   UUGUAACUUUCAGUGCAUUGA   1041

2.5 Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein mRNA Tetratricopeptide repeat (TPR)-like superfamily protein(AT1G63230) coding protein psRNATarget
NM_180026.2
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||*|||||||||||
targets:952   UUGUUACUUACAAUGCAUUGA   972

2.5 Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein (EMB2654), mRNA Tetratricopeptide repeat (TPR)-like superfamily protein(EMB2654) coding protein psRNATarget
AY117242.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||*|||||||||||
targets:1274   UUGUUACUUACAAUGCAUUGA   1294

2.5 Arabidopsis thaliana putative salt-inducible protein (At2g41720) mRNA, complete cds NA coding protein psRNATarget
AY091135.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||*|||||||||||
targets:1282   UUGUUACUUACAAUGCAUUGA   1302

2.5 Arabidopsis thaliana putative salt-inducible protein (At2g41720) mRNA, complete cds NA coding protein psRNATarget
AK318685.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||*|||||||||||
targets:1283   UUGUUACUUACAAUGCAUUGA   1303

2.5 Arabidopsis thaliana AT2G41720 mRNA, complete cds, clone: RAFL09-84-H21 NA coding protein psRNATarget
NM_180025.2
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||*|||||||||||
targets:1472   UUGUUACUUACAAUGCAUUGA   1492

2.5 Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein (EMB2654), mRNA Tetratricopeptide repeat (TPR)-like superfamily protein(EMB2654) coding protein psRNATarget
NM_001336935.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  |*||=||||*|||||||||||
targets:1472   UUGUUACUUACAAUGCAUUGA   1492

2.5 Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein (EMB2654), mRNA Tetratricopeptide repeat (TPR)-like superfamily protein(EMB2654) coding protein psRNATarget
NM_001345163.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  **||=|||||||||||*||||
targets:998   AUGUUACUUUCAAUGCUUUGA   1018

2.5 Arabidopsis thaliana PPR superfamily protein partial mRNA PPR superfamily protein(AT5G55840) coding protein psRNATarget
NM_124966.3
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  **||=|||||||||||*||||
targets:1163   AUGUUACUUUCAAUGCUUUGA   1183

2.5 Arabidopsis thaliana PPR superfamily protein mRNA PPR superfamily protein(AT5G55840) coding protein psRNATarget
NM_001345162.1
ncRNA:21   AUCAGUGAAAGUUACGUAACU   1
  **||=|||||||||||*||||
targets:1163   AUGUUACUUUCAAUGCUUUGA   1183

2.5 Arabidopsis thaliana PPR superfamily protein mRNA PPR superfamily protein(AT5G55840) coding protein psRNATarget

Reference

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