A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_ahy_miR957
Species	Arachis hypogaea
Class	miRNA
Genome position	Araip.B07:120091852-120092070 [-]
Reference genome	Araip_v1.0
Source	SRR2922380
Length	24
Mature sequence(if miRNA)	196 - UAACUCUGAUUUGUCAUGCUAGAC - 219
Stem-loop(if miRNA)	---UAA GU G C A UG A CA GA G AUUUUGGAGAAUAAAAGGAGAUAAAAUAA CUCUGAUUU CAU CUAGA ACA GGUUAAAUAAUGUU UUCGUUUUGGC CUUAAAUAAAA AAAAC U UC U \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\| GAGACUGAA GUA GAUUU UGU UCGAUUUGUUACAG AAGUAAAACUG GAAUUUAUUUU UUUUG U UU U GGAAUC UG G A A CA C -A -- - UUCUAUUUUUUCUCAAAUAUACUACAUGU
Stem-loop sequence	UAACUCUGAUUUGUCAUGCUAGACACAAGGUUAAAUAAUGUUUGUUCGUUUUGGCACUUAAAUAAAACAAAAACGAUGUCAUUUUGGAGAAUAAAAGGAGAUAAAAUAAUUUGUACAUCAUAUAAACUCUUUUUUAUCUUUUUGUUUUAUUUUAUUUAAGCGUCAAAAUGAAACGACAUUGUUUAGCUAUGUAUUUAGGAUGGUAAGUCAGAGCUAAGG

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

EZ736879.1

ncRNA:24	CAG-A-UCGUACUGUUUAGUCUCAAU	1
	\|\|=-\|-\|\|*\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|
targets:155	GUUGUGAGAAUGACAGAUCAGAGUUA	180

2.5

TSA: Arachis hypogaea CL2454Contig3.Arhy mRNA sequence

coding protein

JR542122.1

ncRNA:24	CAG-A-UCGUACUGUUUAGUCUCAAU	1
	\|\|=-\|-\|\|*\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|
targets:592	GUUGUGAGAAUGACAGAUCAGAGUUA	617

2.5

TSA: Arachis hypogaea Ahy.Unigene1458 mRNA sequence

coding protein

GAER01031567.1

ncRNA:24	CAG-A-UCGUACUGUUUAGUCUCAAU	1
	\|\|=-\|-\|\|*\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|
targets:560	GUUGUGAGAAUGACAGAUCAGAGUUA	585

2.5

TSA: Arachis hypogaea Unigene31589 mRNA sequence

coding protein

GAER01031566.1

ncRNA:24	CAG-A-UCGUACUGUUUAGUCUCAAU	1
	\|\|=-\|-\|\|*\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|
targets:608	GUUGUGAGAAUGACAGAUCAGAGUUA	633

2.5

TSA: Arachis hypogaea Unigene31588 mRNA sequence

coding protein