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BaseInfo

ncRNA ID ath-miRf10412-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - CUACUCGACCUCUGGGUCGAGUG - NA
Stem-loop(if miRNA)    G   G          U            U  A  GCAGUGGU   G  ----CU       -  U
GAU AGG CACUCGACCC GAGGUCGAGUGG GA GU        GAU UC      UUACUCG CC G
||| ||| |||||||||| |||||||||||| || ||        ||| ||      ||||||| ||
CUG UUU GUGAGCUGGG CUCCAGCUCAUC CU CG        CUA AG      GGUGAGC GG G
   -   G          U            -  -  ---AAGUU   G  UUCUCU       U  U
Stem-loop sequence GAUGAGGGCACUCGACCCUGAGGUCGAGUGGUGAAGUGCAGUGGUGAUGUCCUUUACUCGCCUGGUGGUCGAGUGGUCUCUUGAGAUCUUGAAGCUCCUACUCGACCUCUGGGUCGAGUGGUUUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY227642.1
ncRNA:23   GUGAGCUGGGUCUCCAGCUCAUC   1
  |||||||||||||||||||||||
targets:764   CACUCGACCCAGAGGUCGAGUAG   786

0.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:23   GUGAGCUGGGUCUCCAGCUCAUC   1
  |||||||||**||||||||||||
targets:1527   CACUCGACCACGAGGUCGAGUAG   1549

2.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:23   GUGAGCUGGGUCUCCAGCUCAUC   1
  |||||*|||=||||||||||||*
targets:927   CACUCUACCUAGAGGUCGAGUAU   949

3.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183194.1
ncRNA:23   GUGAGCUGGGUCUCCAGCUCAUC   1
  |||||*|||*||||||||||||*
targets:576   CACUCUACCAAGAGGUCGAGUAU   598

3.0 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget