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BaseInfo

ncRNA ID novel_ahy_miR920
Species Arachis hypogaea
Class miRNA
Genome position Araip.B06:120347723-120347872 [+]
Reference genome Araip_v1.0
Source SRR2922380
Length 24
Mature sequence(if miRNA) 1 - CUUAUCUUGUUUAUACUGUAAACG - 24
Stem-loop(if miRNA) --                 G    C    AAAUUAUGA         G    C   AGUUAA      C     --   U
  CUUAUCUUGUUUAUACU UAAA GAGA         AUGUAUUUU UUUA ACU      AUUUUA UUUGC  ACG G
  ||||||||||||||||| |||| ||||         ||||||||| |||| |||      |||||| |||||  ||| U
  GGAUAGAGCAAAUGUGA AUUU CUCU         UACGUAAAA AAGU UGA      UAAAGU AAACG  UGC C
GU                 G    A    --------A         A    U   GGUCUA      -     UU   U
Stem-loop sequence CUUAUCUUGUUUAUACUGUAAACGAGAAAAUUAUGAAUGUAUUUUGUUUACACUAGUUAAAUUUUACUUUGCACGUGUCUCGUUUGCAAAUGAAAUAUCUGGAGUUUGAAAAAAAUGCAUAUCUCAUUUAGAGUGUAAACGAGAUAGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JR578749.1
ncRNA:24   GCAAAUGUCAUAUUUGUUCUAUUC   1
  |*||||||||=|||||=|||||||
targets:54   CAUUUACAGUGUAAACGAGAUAAG   77

2.5 TSA: Arachis hypogaea Ahy.Unigene43542 mRNA sequence NA coding protein psRNATarget
JR574604.1
ncRNA:24   GCAAAUGUCAUAUUUGUUCUAUUC   1
  |*||||||||=||||*||||||||
targets:32   CAUUUACAGUGUAAAGAAGAUAAG   55

2.5 TSA: Arachis hypogaea Ahy.Unigene37641 mRNA sequence NA coding protein psRNATarget
JR566039.1
ncRNA:24   GCAAAUGUCAUAUUUGUUCUAUUC   1
  |||**|*|||||||||||*|||||
targets:582   CGUGAAAAGUAUAAACAACAUAAG   605

2.5 TSA: Arachis hypogaea Ahy.Unigene26240 mRNA sequence NA coding protein psRNATarget
EZ744207.1
ncRNA:24   GCAAAUGUCAUAUUUGUUCUAUUC   1
  |||**|*|||||||||||*|||||
targets:715   CGUGAAAAGUAUAAACAACAUAAG   738

2.5 TSA: Arachis hypogaea CL1332Contig2.Arhy mRNA sequence NA coding protein psRNATarget