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BaseInfo

ncRNA ID	ath-miR5025
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:16993891-16994045 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	23 - ACUGUAUAUAUGUAAGUGACA - 43
Stem-loop(if miRNA)	---------------GGCU    --A  --A    C                                  AAAAAAUAUGUAGA   A  -  G                    CGUU   GA   AAAG UACUUACUGUAUAUAUGUAAGUGACAUAAUCUUU              GGA GA AG A                    ||||   ||   |||| ||||||||||||||||||||||||||||||||||              ||| || ||                    GCAA   CU   UUUC AUGAAUGACAUAUAUACAUUCACUGUAUUAGAAA              CCU CU UC U CUGUUUCAACAAUUAUAUU    GAC  ACG    A                                  --------------   -  A  G
Stem-loop sequence	GGCUCGUUAGAAAAAGCUACUUACUGUAUAUAUGUAAGUGACAUAAUCUUUAAAAAAUAUGUAGAGGAAGAAGGAUGCUAUCUCCAAAGAUUAUGUCACUUACAUAUAUACAGUAAGUAACUUUGCAUCCAGAACGUUAUAUUAACAACUUUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_179530.1	ncRNA:21   ACAGUGAAUGUAUAUAUGUCA   1   |*||||*||||||||||||*| targets:1142   UUUCACCUACAUAUAUACACU   1162 Target Full Sequence	2.5	Arabidopsis thaliana 3-ketoacyl-CoA synthase 6 (KCS6), mRNA	3-ketoacyl-CoA synthase 6(KCS6)	coding protein	psRNATarget

Reference

1	PMID:21357774 "MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011).