Search result

BaseInfo

ncRNA ID	ath-miRf10402-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - ACUCGACAAGGGGGUCGAGUG - NA
Stem-loop(if miRNA)	G           G G          AGUGAU   G GG  G  GAGA  U    GUGGUGA         A              GAUGAGGAA GUA UACUCGACCUC U GUCGAGUGGG      CGA U  AC GC    AU GGAU       UACUCGAUC CUUGGUCGAGUAGU         U ||| ||||||||||| | ||||||||||      ||| |  || ||    || ||||       ||||||||| |||||||||||||| UAU GUGAGCUGGGG A CAGCUCAUCU      GCU A  UG UG    UG UCUG       GUGAGCUGG GGACCAGCUCAUCG         G    G           G A          ------   G GG  G  -AAG  U    -------         G              ACGGAAGUG
Stem-loop sequence	GUAGUACUCGACCUCGUGGUCGAGUGGGAGUGAUCGAGUGGACGGCGAGAAUUGGAUGUGGUGAUACUCGAUCACUUGGUCGAGUAGUGAUGAGGAAUGGUGAAGGCAGCUACUCGACCAGGGGGUCGAGUGGUCUUGUGAAGUGGUGGAGUCGUCUACUCGACAAGGGGGUCGAGUGGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||||||*||||||| targets:91   CACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||||||*||||||| targets:231   CACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   =||||||||||||*||||||| targets:182   UACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||||||*||||||| targets:231   CACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   =||||||||||||*||||||| targets:182   UACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||||||*||||||| targets:125   CACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||*||||||||||| targets:264   CACUCGACCACCUUGUCGAGU   284 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||||||*||||||| targets:500   CACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||*||||||||||| targets:639   CACUCGACCACCUUGUCGAGU   659 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||||||*||||||| targets:500   CACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||*||||||||||| targets:639   CACUCGACCACCUUGUCGAGU   659 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   |||||||||||||*||||||| targets:1572   CACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   =||||||||||||*||||||| targets:309   UACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   =||||*|||||||*||||||| targets:302   UACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   =||||*|||||||*||||||| targets:302   UACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   GUGAGCUGGGGGAACAGCUCA   1   =||*|||||||||*||||||| targets:584   UACYCGACCCCCUGGUCGAGU   604 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget