ncRNA ID | ath-miR5024-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:16766259-16766438 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 27 - CCGUAUCUUGGCCUUGUCAUU - 47 |
Stem-loop(if miRNA) |
   U     ACC  A                                AA   A                             UAUUGAAG GGA AUUGA   GA GAUCGACGGUUGAGAUGACAAGGCCAAGAUAU  CAA AAGAUAUUAUUCUAGAAGAUAAAUGUUAA        U ||| |||||   || ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| UCU UAGCU   CU CUAGUUGCCAACUUUACUGUUCCGGUUCUAUG  GUU UUUUAUAAUAAGAUUUUCUAUUUACAAUU        U    C     -GU  -                                CC   C                             UGAAAGAU |
Stem-loop sequence | GGAUAUUGAACCGAAGAUCGACGGUUGAGAUGACAAGGCCAAGAUAUAACAAAAAGAUAUUAUUCUAGAAGAUAAAUGUUAAUAUUGAAGUUUAGAAAGUUUAACAUUUAUCUUUUAGAAUAAUAUUUUCUUGCCGUAUCUUGGCCUUGUCAUUUCAACCGUUGAUCUCUGUCGAUCUCU |
1 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |
2 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |