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BaseInfo

ncRNA ID ath-miR5024-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:16766259-16766438 [-]
Reference genome TAIR10
Source miRBase
Length 22
Mature sequence(if miRNA) 130 - AUGACAAGGCCAAGAUAUAACA - 151
Stem-loop(if miRNA)    U     ACC  A                                AA   A                             UAUUGAAG
GGA AUUGA   GA GAUCGACGGUUGAGAUGACAAGGCCAAGAUAU  CAA AAGAUAUUAUUCUAGAAGAUAAAUGUUAA        U
||| |||||   || ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||
UCU UAGCU   CU CUAGUUGCCAACUUUACUGUUCCGGUUCUAUG  GUU UUUUAUAAUAAGAUUUUCUAUUUACAAUU        U
   C     -GU  -                                CC   C                             UGAAAGAU
Stem-loop sequence GGAUAUUGAACCGAAGAUCGACGGUUGAGAUGACAAGGCCAAGAUAUAACAAAAAGAUAUUAUUCUAGAAGAUAAAUGUUAAUAUUGAAGUUUAGAAAGUUUAACAUUUAUCUUUUAGAAUAAUAUUUUCUUGCCGUAUCUUGGCCUUGUCAUUUCAACCGUUGAUCUCUGUCGAUCUCU

Reference

1 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).
2 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).