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BaseInfo

ncRNA ID novel_ahy_miR672
Species Arachis hypogaea
Class miRNA
Genome position Araip.B05:9758216-9758407 [-]
Reference genome Araip_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - UACACUGUAAACGAGAUAAGACUG - 24
Stem-loop(if miRNA) --C         A                          C  A   A         C   A            CAU   -ACA    G  -     CA
   UCUUAUUUC UUUACAGUGUAAAUGAAAUAAUACUA AU UAU UCGUUUAUA UGU AAUGAGAUAAGG   GAG    AUAU GC UGUAU  C
   ||||||||| |||||||||||||||||||||||||| || ||| ||||||||| ||| ||||||||||||   |||    |||| || |||||  G
   AGAAUAGAG AAAUGUCACAUUUAUUUUAUUAUGAU UA AUA AGCAAAUGU ACA UUAUUCUAUUCU   CUC    UGUG UG ACAUG  U
GUC         C                          A  C   A         A   C            ---   AAUG    A  C     UU
Stem-loop sequence CUCUUAUUUCAUUUACAGUGUAAAUGAAAUAAUACUACAUAUAUAUCGUUUAUACUGUAAAUGAGAUAAGGCAUGAGACAAUAUGGCUGUAUCACGUUUGUACACGUAGUGUGUAACUCUCUUAUCUUAUUCACAAUGUAAACGAAAUACAUAUAGUAUUAUUUUAUUUACACUGUAAACGAGAUAAGACUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GAER01058827.1
ncRNA:24   GUCAGAAUAGAGCAAAUGUCACAU   1
  ||--|*||||||||||||||||||
targets:80   CA--CGUAUCUCGUUUACAGUGUA   101

1.0 TSA: Arachis hypogaea Unigene58874 mRNA sequence NA coding protein psRNATarget
JR578749.1
ncRNA:24   GUCAGAAUAGAGCAAAUGUCACAU   1
  ||**||||||||*|||||||||||
targets:43   CAACCUUAUCUCAUUUACAGUGUA   66

1.5 TSA: Arachis hypogaea Ahy.Unigene43542 mRNA sequence NA coding protein psRNATarget
JR574604.1
ncRNA:24   GUCAGAAUAGAGCAAAUGUCACAU   1
  ==||-|||||||*|||||||||||
targets:22   UGGU-UUAUCUCAUUUACAGUGUA   44

1.5 TSA: Arachis hypogaea Ahy.Unigene37641 mRNA sequence NA coding protein psRNATarget
JR574604.1
ncRNA:24   GUCAGAAUAGAGCAAAUGUCACAU   1
  =|**|||||||||||||||*||||
targets:175   UAUACUUAUCUCGUUUACACUGUA   198

1.5 TSA: Arachis hypogaea Ahy.Unigene37641 mRNA sequence NA coding protein psRNATarget
JR578749.1
ncRNA:24   GUCA------GAAUAGAGCAAAUGUCACAU   1
  *|||------|||||*|||||||=||||||
targets:139   GAGUUUGUGCCUUAUGUCGUUUAUAGUGUA   168

2.5 TSA: Arachis hypogaea Ahy.Unigene43542 mRNA sequence NA coding protein psRNATarget