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BaseInfo

ncRNA ID ath-miRf10380-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - ACCCGACCUCGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)   G   A          G       A  -     ---GA    GUA CUCUCGUGGUGGUACUCGGCCAGGGGUCGAGUGAUGAGAUGA
GU AAG CACUCGACCU GGGGUCG GU GAAGU     UCGA   U                                          A
|| ||| |||||||||| ||||||| || |||||     ||||   |                                          A
CA UUU GUGAGCUGGG CUCCAGC CA CUUCG     CCGG   A                                          U
  G   G          G       C  U     AAGUU    --- GUUGUCUGGUGAGCUGGGGGACCAACUCAUCCCCUGAAGAGC
Stem-loop sequence GUGAAGACACUCGACCUGGGGGUCGAGUGAAGUGAUCGAGUAUCUCUCGUGGUGGUACUCGGCCAGGGGUCGAGUGAUGAGAUGAAAUCGAGAAGUCCCCUACUCAACCAGGGGGUCGAGUGGUCUGUUGAGGCCUUGAAGCUUCUACCCGACCUCGGGGUCGAGUGGUUUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY227642.1
ncRNA:23   UGGUGAGCUGGGGCUCCAGCCCA   1
  ||||||||||||||||||||*||
targets:853   ACCACUCGACCCCGAGGUCGAGU   875

1.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:23   UGGUGAGCUGGGGCUCCAGCCCA   1
  |=||||||||||||||||||*||
targets:1616   AUCACUCGACCCCGAGGUCGAGU   1638

1.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget