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BaseInfo

ncRNA ID novel_ahy_miR633
Species Arachis hypogaea
Class miRNA
Genome position Araip.B04:806930-807127 [-]
Reference genome Araip_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - AAUAGAGAUAUUGUAGUCAUUUUU - 24
Stem-loop(if miRNA) --    U           C        AAACACA            AUAUU    A          C                           AUAACGAU
  AAAU ACUACAAUAUC CUAUUAUA       ACUAAAAUAUUU     UUAU UAUAUAUAUU AUUUUGAAAAUUUUAAAUUCUAACCCU        A
  |||| ||||||||||| ||||||||       ||||||||||||     |||| |||||||||| |||||||||||||||||||||||||||
  UUUA UGAUGUUAUAG GAUAAUAU       UGAUUUUAUGAG     AAUA AUAUAUAUAA UAAAACUUUUAGGAUUUAAGAUUGGGA        G
UU    C           A        AUUUUAC            -----    -          U                           AAAGAAGA
Stem-loop sequence AAAUUACUACAAUAUCCCUAUUAUAAAACACAACUAAAAUAUUUAUAUUUUAUAUAUAUAUAUUCAUUUUGAAAAUUUUAAAUUCUAACCCUAUAACGAUAGAGAAGAAAAGGGUUAGAAUUUAGGAUUUUCAAAAUUAAUAUAUAUAAUAAGAGUAUUUUAGUCAUUUUAUAUAAUAGAGAUAUUGUAGUCAUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ722988.1
ncRNA:24   UUUUUACUGAUGUUAUAGAGAUAA   1
  ||=||**||*||||||||||||||
targets:248   AAGAACAACAACAAUAUCUCUAUU   271

3.0 TSA: Arachis hypogaea CL1Contig2004.Arhy mRNA sequence NA coding protein psRNATarget