Search result

BaseInfo

ncRNA ID novel_ahy_miR619
Species Arachis hypogaea
Class miRNA
Genome position Araip.B04:99018285-99018478 [-]
Reference genome Araip_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - UAAGGACCAAAAUAGGAUUACGCC - 24
Stem-loop(if miRNA) --         C               A         C           C       U        A       G   ----UCUC   GUGAGGUCAA
  CGUAAUCUU UUUUGGUCCUUAAGG UUAAAGUGU CUAUUUGAAUC AAAAAAG UUCAUUUA CUUCAAU UAG        ACC          A
  ||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| ||||||| |||        |||
  GCAUUAGGA AAAACCAGGAAUUCC AAUUUCAUA GAUAAAUUUAG UUUUUUU AAGUAAAU GAAGUUA AUC        UAA          G
CC         U               A         A           A       U        C       A   CUGUAAGG   UUAAUAAAUU
Stem-loop sequence CGUAAUCUUCUUUUGGUCCUUAAGGAUUAAAGUGUCCUAUUUGAAUCCAAAAAAGUUUCAUUUAACUUCAAUGUAGUCUCACCGUGAGGUCAAAGUUAAAUAAUUAAUGGAAUGUCCUAAAUUGAAGCUAAAUGAAUUUUUUUUAGAUUUAAAUAGAAUACUUUAAACCUUAAGGACCAAAAUAGGAUUACGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ751911.1
ncRNA:24   CCGCAUUAGGAUAAAACCAGGAAU   1
  ||||||||=||=||||||||||||
targets:521   GGCGUAAUUCUGUUUUGGUCCUUA   544

2.5 TSA: Arachis hypogaea CL1424Contig1.Arhy mRNA sequence NA coding protein psRNATarget
GAER01027082.1
ncRNA:24   CCGCAUUAGGAUAAAACCAGGAAU   1
  |****|||=|||||||||||||*|
targets:523   GAACAAAUUCUAUUUUGGUCCUCA   546

2.5 TSA: Arachis hypogaea Unigene27099 mRNA sequence NA coding protein psRNATarget
JR541236.1
ncRNA:24   CCGCAUUAGGAUAAAACCAGGAAU   1
  |****|||=|||||||||||||*|
targets:523   GAACAAAUUCUAUUUUGGUCCUCA   546

2.5 TSA: Arachis hypogaea Ahy.Unigene540 mRNA sequence NA coding protein psRNATarget