| ncRNA ID | ath-miR5645d |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr1:16116572-16117041 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 37 - AUUUGAGUCAUGUCGUUAAG - 56 |
| Stem-loop(if miRNA) |
U U U AU C CUCC CAGCUCGUUUUCUCUA C U - UUAAAUU C AAUCGAUUUUAUUAUCUGCGAUUUUGAGGUCAAUGUGGGUAUGUGAUUUUGAGAUAAUGAAAUCGAUU UUCGAAAUAAA GACAAAGUUUUUGUUGACUUGUCAUUUGAGUCAUG CGUUAAGUAGGUUGAC AAUUUUUUUACGGCGUUAAUGUCU GUUUAU UCUGUUAGAACAAAACAACGUUGUUUAUUG UUGAAA AAAU UAAA CC CC A U ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||| |||| |||| || || | AAGCUUUAUUU CUGUUUUAAAAACAACUGAACGGUAAACUCAGUAU GCAAUUUAUCCAAUUG UUAAAAAAAUGCCGCAAUUACAGA CAAAUA AGAUAAUCUUGUUUUGUUGCAGCAAAUAAC UUCUGU UUUG UGCA CA AA A A A U U CC A AAUU --------------UU - C A ------- - AAAAAAAAAAAAAAAAGAAAAAAAAAAUUUUGCUGCAACAAAACAGAGAACUUUAUUUAUAUUUGGGG |
| Stem-loop sequence | UUUCGAAAUAAAUGACAAAGUUUUUGUUGACUUGUCAUUUGAGUCAUGUCGUUAAGUAGGUUGACAUAAUUUUUUUACGGCGUUAAUGUCUCGUUUAUCUCCUCUGUUAGAACAAAACAACGUUGUUUAUUGCAGCUCGUUUUCUCUAUUGAAACAAAUUUAAACCUUAAAUUCCCAAAUCGAUUUUAUUAUCUGCGAUUUUGAGGUCAAUGUGGGUAUGUGAUUUUGAGAUAAUGAAAUCGAUUUAGGGGUUUAUAUUUAUUUCAAGAGACAAAACAACGUCGUUUUAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAACAACGUCGUUUUGUCUUUUCAAUAAACGACGUUGUUUUGUUCUAAUAGAUUAAAUAAACAAGACAUUAACGCCGUAAAAAAAUUCCGUUAACCUAUUUAACGUUAUGACUCAAAUGGCAAGUCAACAAAAAUUUUGUCUUUUAUUUCGAAA |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |