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BaseInfo

ncRNA ID novel_ahy_miR580
Species Arachis hypogaea
Class miRNA
Genome position Araip.B03:36216623-36216719 [-]
Reference genome Araip_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - AAACUUAGAGUUUGACUGUGUGGG - 24
Stem-loop(if miRNA) -CA    ---       A        AUA      UU AA  -      U
   ACAC   CAAACUU GAGUUUGG   UGGGAG  C  CA CCAAAC U
   ||||   ||||||| ||||||||   ||||||  |  || |||||| A
   UGUG   GUUUGAG UUCAAACC   ACCCUC  G  GU GGUUUG G
GGG    UCA       A        ACA      CG -A  C      A
Stem-loop sequence CAACACCAAACUUAGAGUUUGGAUAUGGGAGUUCAACACCAAACUUAGAGUUUGGCUGAGGCCUCCCAACACCAAACUUAGAGUUUGACUGUGUGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ753146.1
ncRNA:24   GGGUGUGUCAGUUUGAGAUUCAAA   1
  |||*||||||||||||||||||||
targets:321   CCCCCACAGUCAAACUCUAAGUUU   344

0.0 TSA: Arachis hypogaea CL7142Contig1.Arhy mRNA sequence NA coding protein psRNATarget
EZ754478.1
ncRNA:24   GGGUGUGUCAGUUUGAGAUUCAAA   1
  |==|=|||*|||||*|||||||||
targets:68   CUUAUACAUUCAAAGUCUAAGUUU   91

2.5 TSA: Arachis hypogaea CL15636Contig1.Arhy mRNA sequence NA coding protein psRNATarget
EZ753146.1
ncRNA:24   GGGUGUGUCAGUUUGAGAUUCAAA   1
  |=|*||=|**||||||||||||||
targets:387   CUCUCAUAUCCAAACUCUAAGUUU   410

3.0 TSA: Arachis hypogaea CL7142Contig1.Arhy mRNA sequence NA coding protein psRNATarget