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BaseInfo

ncRNA ID novel_ahy_miR578
Species Arachis hypogaea
Class miRNA
Genome position Araip.B03:56347371-56347436 [-]
Reference genome Araip_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 43 - UUUACACUGUAAACAAGAUAAGGC - 66
Stem-loop(if miRNA) --      C             A GC     CG
  UUUACA UGUAAACAAGAUA G  AUGUG  C
  |||||| ||||||||||||| |  |||||  G
  AAAUGU ACAUUUGUUCUAU U  UGCAC  U
GC      U             A -A     AG
Stem-loop sequence UUUACACUGUAAACAAGAUAAGGCAUGUGCGCGUGACACGUAUAUAUCUUGUUUACAUUGUAAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GAER01058827.1
ncRNA:24   CG-GAAUAGAACAAAUGUCACAUUU   1
  ||-|*|||||*||||||||||||||
targets:79   GCACGUAUCUCGUUUACAGUGUAAA   103

1.0 TSA: Arachis hypogaea Unigene58874 mRNA sequence NA coding protein psRNATarget
JR578749.1
ncRNA:24   CGGAAUAGAACAAAUGUCACAUUU   1
  *||||||||**|||||||||||||
targets:45   ACCUUAUCUCAUUUACAGUGUAAA   68

2.0 TSA: Arachis hypogaea Ahy.Unigene43542 mRNA sequence NA coding protein psRNATarget
JR574604.1
ncRNA:24   CGGAAUAGAACAAAUGUCACAUUU   1
  |*=||||||**|||||||||||||
targets:23   GGUUUAUCUCAUUUACAGUGUAAA   46

2.0 TSA: Arachis hypogaea Ahy.Unigene37641 mRNA sequence NA coding protein psRNATarget
JR578749.1
ncRNA:24   CGGAAUAGAACAAAUGUCACAUUU   1
  **||||||||*||||||*||||||
targets:184   UACUUAUCUUCUUUACACUGUAAA   207

2.5 TSA: Arachis hypogaea Ahy.Unigene43542 mRNA sequence NA coding protein psRNATarget
JR574604.1
ncRNA:24   CGGAAUAGAACAAAUGUCACAUUU   1
  **|||||||*|||||||*||||||
targets:177   UACUUAUCUCGUUUACACUGUAAA   200

2.5 TSA: Arachis hypogaea Ahy.Unigene37641 mRNA sequence NA coding protein psRNATarget