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BaseInfo

ncRNA ID novel_ahy_miR574
Species Arachis hypogaea
Class miRNA
Genome position Araip.B01:122329121-122329327 [+]
Reference genome Araip_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - UUAACUGAUAGCAUAUAUGACACA - 24
Stem-loop(if miRNA) --    C               C  A        UC    A A              A    C      C   C          CU  GUCAUAUUAGGAAUA
  UUAA UGAUAGCAUAUAUGA AC UGAUAUGU  AAUU G UGUUGACUAAAUAU UUUA GAAAAU UAU AAUUUAGUCA  AG               U
  |||| ||||||||||||||| || ||||||||  |||| | |||||||||||||| |||| |||||| ||| ||||||||||  ||               G
  AAUU ACUAUUGUAUAUAUU UG ACUAUACA  UUAA C AUAACUGAUUUAUA AAAU CUUUUA AUA UUAAAUCAGU  AA               A
GC    A               A  C        GA    C C              C    A      A   A          AA  AAAGUUAAUGUUUUU
Stem-loop sequence UUAACUGAUAGCAUAUAUGACACAUGAUAUGUUCAAUUAGAUGUUGACUAAAUAUAUUUACGAAAAUCUAUCAAUUUAGUCACUAGGUCAUAUUAGGAAUAUGAUUUUUGUAAUUGAAAAAAAUGACUAAAUUAAUAAAUUUUCAUAAACAUAUUUAGUCAAUACCCAAUUAGACAUAUCACGUAUUAUAUAUGUUAUCAAUUAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ747421.1
ncRNA:24   ACACAGUAUAUACGAUAGUCAAUU   1
  ||||||||=|||||||||||||||
targets:724   UGUGUCAUGUAUGCUAUCAGUUAA   747

1.0 TSA: Arachis hypogaea CL19737Contig1.Arhy mRNA sequence NA coding protein psRNATarget
GAER01049126.1
ncRNA:24   AC--ACAGUAUAUACGAUAGUCAAUU   1
  ||--|||=*|||||||||||||||||
targets:44   UGAUUGUUUUAUAUGCUAUCAGUUAA   69

2.0 TSA: Arachis hypogaea Unigene49163 mRNA sequence NA coding protein psRNATarget
EZ735986.1
ncRNA:24   ACACAGUAUAUACGAUAGUCAAUU   1
  **|||=*|||||||||||||||||
targets:17   AUUGUUUUAUAUGCUAUCAGUUAA   40

2.0 TSA: Arachis hypogaea CL1Contig15002.Arhy mRNA sequence NA coding protein psRNATarget