A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_ahy_miR518
Species	Arachis hypogaea
Class	miRNA
Genome position	Aradu.A02:9719222-9719433 [-]
Reference genome	Aradu_v1.0
Source	SRR1323745
Length	24
Mature sequence(if miRNA)	1 - AAUCAAGCAAACCCAAAAGAGAGG - 24
Stem-loop(if miRNA)	-- - A -C C A -U ACUUUUGGAGUUUA AAAUCAAACUCUUGACUUUUU UCUUUUU GG UUUGUUUGAUU UGUAUAGGC UUCUUUUCUUUUUUAUUUGCCUUAU CUAUUUU UUUC CCAA G \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\| AGAGAAA CC AAACGAACUAA ACGUAUCCG AAGAAAAGAGAAAAUAAACGGAAUA GAUAAAA AAAG ACUG G GG A C AA A C CC -------------U UACCAUAGUCGCAAAAAUACA
Stem-loop sequence	UCUUUUUGGAUUUGUUUGAUUCUGUAUAGGCCUUCUUUUCUUUUUUAUUUGCCUUAUACUAUUUUUUUUCACUUUUGGAGUUUACCAAAAAUCAAACUCUUGACUUUUUGGACAUAAAAACGCUGAUACCAUGUCAUGAAACCAAAAUAGCAUAAGGCAAAUAAAAGAGAAAAGAAAGCCUAUGCAAAAAUCAAGCAAACCCAAAAGAGAGG

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

GAER01029462.1

ncRNA:24	GGAG-------AGAAAACCCAAACGAACUAA	1
	\|\|\|=-------\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:827	CCUUGCUUGUGUCUUUUUGUUUUGCUUGAUU	857

2.5

TSA: Arachis hypogaea Unigene29482 mRNA sequence

coding protein

GAER01044758.1

ncRNA:24	GGAG----AGAA---AACCCAAACGAACUAA	1
	*\|\|\|----\|\|\|\|---\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1477	GCUCAAGAUCUUGAGUUGGGUUUGCUUGAUU	1507

3.0

TSA: Arachis hypogaea Unigene44792 mRNA sequence

coding protein

JR544283.1

ncRNA:24	GGAG----AGAA---AACCCAAACGAACUAA	1
	*\|\|\|----\|\|\|\|---\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1476	GCUCAAGAUCUUGAGUUGGGUUUGCUUGAUU	1506

3.0

TSA: Arachis hypogaea Ahy.Unigene3670 mRNA sequence

coding protein

GAER01004473.1

ncRNA:24	GGAG----AGAA---AACCCAAACGAACUAA	1
	*\|\|\|----\|\|\|\|---\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1528	GCUCAAGAUCUUGAGUUGGGUUUGCUUGAUU	1558

3.0

TSA: Arachis hypogaea Unigene4475 mRNA sequence

coding protein