Search result

BaseInfo

ncRNA ID novel_ahy_miR517
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A02:24771124-24771334 [-]
Reference genome Aradu_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 188 - UUAACUGAUAGCAUAUAUGACACA - 211
Stem-loop(if miRNA) --    C      C     UG C  A        UC       CG  A    U         AA     C   C      ---------A       -CUU        U
  UUAA UGAUAG AUAUA  A AC UAAUAUGU  AAUUGGA  UU ACUA AUAUGUUUA  AAAAU UAU AAUUUA          UUAGUUA    GGUCAUAU G
  |||| |||||| |||||  | || ||||||||  |||||||  || |||| |||||||||  ||||| ||| ||||||          |||||||    |||||||| G
  AAUU ACUAUU UAUAU  U UG AUUAUACA  UUAAUCU  AA UGGU UAUAUAAAU  UUUUA AUA UUAAAU          GAUUAAU    UUAGUAUA G
GC    A      A     GU A  G        GA       AU  C    U         AC     A   A      CAGUAAAAAG       AUUU        A
Stem-loop sequence UUAACUGAUAGCAUAUAUGACACAUAAUAUGUUCAAUUGGACGUUAACUAUAUAUGUUUAAAAAAAUCUAUCAAUUUAAUUAGUUACUUGGUCAUAUUGGGAAUAUGAUUUUUAUAAUUAGGAAAAAUGACUAAAUUAAUAAAUUUUCAUAAAUAUAUUUGGUCAAUAUCUAAUUAGACAUAUUAGGUAUUGUAUAUAUUAUCAAUUAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ747421.1
ncRNA:24   ACACAGUAUAUACGAUAGUCAAUU   1
  ||||||||=|||||||||||||||
targets:724   UGUGUCAUGUAUGCUAUCAGUUAA   747

1.0 TSA: Arachis hypogaea CL19737Contig1.Arhy mRNA sequence NA coding protein psRNATarget
GAER01049126.1
ncRNA:24   AC--ACAGUAUAUACGAUAGUCAAUU   1
  ||--|||=*|||||||||||||||||
targets:44   UGAUUGUUUUAUAUGCUAUCAGUUAA   69

2.0 TSA: Arachis hypogaea Unigene49163 mRNA sequence NA coding protein psRNATarget
EZ735986.1
ncRNA:24   ACACAGUAUAUACGAUAGUCAAUU   1
  **|||=*|||||||||||||||||
targets:17   AUUGUUUUAUAUGCUAUCAGUUAA   40

2.0 TSA: Arachis hypogaea CL1Contig15002.Arhy mRNA sequence NA coding protein psRNATarget