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BaseInfo

ncRNA ID novel_ahy_miR513
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A02:79444834-79445058 [-]
Reference genome Aradu_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - UGUCUUUCGAGAUAAUUGUCAGGG - 24
Stem-loop(if miRNA) --          C         A   C   AU  C           CAC     UC     C   ----      UUU     U   U    -  A           GCACUCA      
  UUGACAAUUA UUCGAAAGA CAA GAG  UU UAACAAAAAAA   UCAAU  GGCCU UGG    UAUUUU   GGGAC GAU AGCC CU UGCCAAAAAAA       AUUCGGC
  |||||||||| ||||||||| ||| |||  || |||||||||||   |||||  ||||| |||    ||||||   ||||| ||| |||| || |||||||||||       ||||||C
  GACUGUUAAU GAGCUUUCU GUU CUC  GA AUUGUUUUUUU   AGUUG  CUGGA ACU    AUAGAA   UCUUG UUG UCGG GA ACGGUUUUUUU       UAGGUCU
GG          A         -   A   CG  -           -UA     GA     A   GUUA      CUU     -   U    U  C           -------      
Stem-loop sequence UUGACAAUUACUUCGAAAGAACAACGAGAUUUCUAACAAAAAAACACUCAAUUCGGCCUCUGGUAUUUUUUUGGGACUGAUUAGCCCUAUGCCAAAAAAAGCACUCAAUUCGGCCUCUGGAUUUUUUUUGGCACAGUGGCUUGUUGUUCUUUCAAGAUAAUUGUCAAAGGUCAGGUUGAAUUUUUUUUGUUAAGGCCUCAUUGUCUUUCGAGAUAAUUGUCAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JR552149.1
ncRNA:24   GGGACUGUUAAUAGAGCUUUCUGU   1
  |=|||||||||||||=||||||||
targets:281   CUCUGACAAUUAUCUUGAAAGACA   304

1.5 TSA: Arachis hypogaea Ahy.Unigene11811 mRNA sequence NA coding protein psRNATarget
GAER01057268.1
ncRNA:24   GGGACUGUUAAUAGAGCUUUC-UGU   1
  |||||||||||||||||||||-|||
targets:185   CCCUGACAAUUAUCUCGAAAGGACA   209

3.0 TSA: Arachis hypogaea Unigene57313 mRNA sequence NA coding protein psRNATarget