Search result

BaseInfo

ncRNA ID novel_ahy_miR488
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A10:18144014-18144161 [+]
Reference genome Aradu_v1.0
Source SRR2922381
Length 21
Mature sequence(if miRNA) 1 - CUGAUGUGGCUUGAUGACGUG - 21
Stem-loop(if miRNA) --C        CUU      --      CAU     ACACA   -    C       -  ---      U    ---U   CC
   UGAUGUGG   GAUGAC  GUGGAC   UAGUG     UGA CAUG UGGCAUG GC   CAGGUG GCCA    GUG  A
   ||||||||   ||||||  ||||||   |||||     ||| |||| ||||||| ||   |||||| ||||    |||
   ACUGUAUC   CUAUUG  CACCUG   AUUAC     ACU GUAC ACCGUAU CG   GUUUAC CGGU    CAU  A
UGC        -AC      UA      -UU     ----A   C    -       A  AUU      -    UUAU   AA
Stem-loop sequence CUGAUGUGGCUUGAUGACGUGGACCAUUAGUGACACAUGACAUGCUGGCAUGGCCAGGUGUGCCAUGUGCCAAAAUACUAUUUGGCCAUUUGUUAGCAUAUGCCACAUGCUCAACAUUAUUGUCCACAUGUUAUCCACUAUGUCACGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ740561.1
ncRNA:21   GUGCAGUAGUUCGGUGUAGUC   1
  |=|*|||*||||||||||||*
targets:103   CGCAUCAACAAGCCACAUCAU   123

3.0 TSA: Arachis hypogaea CL1914Contig1.Arhy mRNA sequence NA coding protein psRNATarget
EZ740562.1
ncRNA:21   GUGCAGUAGUUCGGUGUAGUC   1
  |=|*|||*||||||||||||*
targets:117   CGCAUCAACAAGCCACAUCAU   137

3.0 TSA: Arachis hypogaea CL1914Contig2.Arhy mRNA sequence NA coding protein psRNATarget
JR552963.1
ncRNA:21   GUGCAGUAGUUCGGUGUAGUC   1
  |=|*|||*||||||||||||*
targets:106   CGCAUCAACAAGCCACAUCAU   126

3.0 TSA: Arachis hypogaea Ahy.Unigene12673 mRNA sequence NA coding protein psRNATarget
GAER01025784.1
ncRNA:21   GUGCAGUAGUUCGGUGUAGUC   1
  |=|*|||*||||||||||||*
targets:226   CGCAUCAACAAGCCACAUCAU   246

3.0 TSA: Arachis hypogaea Unigene25801 mRNA sequence NA coding protein psRNATarget