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BaseInfo

ncRNA ID novel_ahy_miR405
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A10:20487433-20487590 [-]
Reference genome Aradu_v1.0
Source SRR2922380
Length 24
Mature sequence(if miRNA) 135 - CUUAUCUCGUUUAUACUGUGAACG - 158
Stem-loop(if miRNA) --       C              C       U   A     U   UA      G         A   AG       GA
  CUUAUCU GUUUAUACUGUGAA GAGAUAA UUU UACGU UCU  UUUACA UGUAAAUGA AUA  ACACGUG  C
  ||||||| |||||||||||||| ||||||| ||| ||||| |||  |||||| ||||||||| |||  |||||||  G
  GAAUAGA CAAAUGUGACACUU CUCUAUU GAA GUGCA AGA  AAAUGU ACAUUUGCU UAU  UGUGCAC  U
GA       A              U       U   G     U   GC      G         C   -A       AG
Stem-loop sequence CUUAUCUCGUUUAUACUGUGAACGAGAUAAUUUUAUACGUUUCUUAUUUACAGUGUAAAUGAAAUAAGACACGUGGACGUGACACGUGUAUAUCUCGUUUACAGUGUAAACGAGAUACGUGGAAGUUUAUCUCUUUCACAGUGUAAACAAGAUAAGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JR578749.1
ncRNA:24   GCAAGUGUCAUAUUUGCUCUAUUC   1
  |*||=|||||=|||||||||||||
targets:54   CAUUUACAGUGUAAACGAGAUAAG   77

1.0 TSA: Arachis hypogaea Ahy.Unigene43542 mRNA sequence NA coding protein psRNATarget
JR574604.1
ncRNA:24   GCAAGUGUCAUAUUUGCUCUAUUC   1
  |*||=|||*|||||||||*|||||
targets:69   CAUUUACACUAUAAACGACAUAAG   92

2.5 TSA: Arachis hypogaea Ahy.Unigene37641 mRNA sequence NA coding protein psRNATarget