Search result

BaseInfo

ncRNA ID	novel_ahy_miR398
Species	Arachis hypogaea
Class	miRNA
Genome position	Aradu.A10:107206116-107206199 [-]
Reference genome	Aradu_v1.0
Source	SRR2922380
Length	24
Mature sequence(if miRNA)	61 - UGAAGUUGAUAAUUGAGAACCGUU - 84
Stem-loop(if miRNA)	--           A       CC          -GAUUU  U   UGAAGUUGAUA UUGAGAA  GUUAGAUAAU      AG C   ||||||||||| |||||||  ||||||||||      || A   ACUUUAACUAU AACUCUU  UAAUCUAUUA      UC A AU           A       AA          AAUUAU  A
Stem-loop sequence	UGAAGUUGAUAAUUGAGAACCGUUAGAUAAUGAUUUAGUCAAACUUAUUAAAUUAUCUAAUAAUUCUCAAAUAUCAAUUUCAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GAER01006866.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||||||=|||||||||||||||| targets:235   AACGGUUUUCAAUUAUCAACUUCA   258 Target Full Sequence	1.0	TSA: Arachis hypogaea Unigene6873 mRNA sequence	NA	coding protein	psRNATarget
JR581646.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||||*|||||||||||||||||| targets:118   AACGGCUCUCAAUUAUCAACUUCA   141 Target Full Sequence	1.0	TSA: Arachis hypogaea Ahy.Unigene47526 mRNA sequence	NA	coding protein	psRNATarget
EZ723307.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||||*|||||||||||||||||| targets:189   AACGGCUCUCAAUUAUCAACUUCA   212 Target Full Sequence	1.0	TSA: Arachis hypogaea CL1Contig2323.Arhy mRNA sequence	NA	coding protein	psRNATarget
GAER01053760.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||||*|||||||||||||||||| targets:105   AACGGCUCUCAAUUAUCAACUUCA   128 Target Full Sequence	1.0	TSA: Arachis hypogaea Unigene53800 mRNA sequence	NA	coding protein	psRNATarget
EZ752301.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||**||||=|||||||||||||| targets:613   AACUAUUCUUAAUUAUCAACUUCA   636 Target Full Sequence	1.0	TSA: Arachis hypogaea CL2922Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
EZ749420.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||*||||||||||||||||||=| targets:1   AACAGUUCUCAAUUAUCAACUUUA   24 Target Full Sequence	1.5	TSA: Arachis hypogaea CL7475Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
EZ736594.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*|||||||||||||||||=| targets:639   AACGAUUCUCAAUUAUCAACUUUA   662 Target Full Sequence	1.5	TSA: Arachis hypogaea CL1348Contig2.Arhy mRNA sequence	NA	coding protein	psRNATarget
JR574742.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||=*|||||||=|||||||||||| targets:144   AAUAGUUCUCAGUUAUCAACUUCA   167 Target Full Sequence	1.5	TSA: Arachis hypogaea Ahy.Unigene37779 mRNA sequence	NA	coding protein	psRNATarget
EZ750777.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||*||||||||*||||||||||| targets:93   AACAGUUCUCAACUAUCAACUUCA   116 Target Full Sequence	1.5	TSA: Arachis hypogaea CL16137Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
GAER01053377.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*||=|=|||||||||||||| targets:131   AACGAUUUUUAAUUAUCAACUUCA   154 Target Full Sequence	2.0	TSA: Arachis hypogaea Unigene53416 mRNA sequence	NA	coding protein	psRNATarget
EZ742430.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||=|*||=|=|||||||||||||| targets:313   AAUGAUUUUUAAUUAUCAACUUCA   336 Target Full Sequence	2.0	TSA: Arachis hypogaea CL11350Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
GAER01005017.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |*****|||=|||||||||||||| targets:149   AUGACCUCUUAAUUAUCAACUUCA   172 Target Full Sequence	2.0	TSA: Arachis hypogaea Unigene5021 mRNA sequence	NA	coding protein	psRNATarget
JR556621.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||||||=||||*||||||||||| targets:365   AACGGUUUUCAACUAUCAACUUCA   388 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene16439 mRNA sequence	NA	coding protein	psRNATarget
JR544170.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*||=||||||||||||||=| targets:165   AACGAUUUUCAAUUAUCAACUUUA   188 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene3555 mRNA sequence	NA	coding protein	psRNATarget
GAER01024691.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*||=||||||||||||||=| targets:561   AACGAUUUUCAAUUAUCAACUUUA   584 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene24708 mRNA sequence	NA	coding protein	psRNATarget
GAER01024690.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*||=||||||||||||||=| targets:1189   AACGAUUUUCAAUUAUCAACUUUA   1212 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene24707 mRNA sequence	NA	coding protein	psRNATarget
JR588320.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   =|*||||=|||||||||||=|||| targets:14   GAGGGUUUUCAAUUAUCAAUUUCA   37 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene56748 mRNA sequence	NA	coding protein	psRNATarget
JR550778.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*||||=||*||||||||||| targets:110   AACGAUUCUUAACUAUCAACUUCA   133 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene10402 mRNA sequence	NA	coding protein	psRNATarget
GAER01057592.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||**|||||=|||||||||||| targets:145   AACGACUCUCAGUUAUCAACUUCA   168 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene57638 mRNA sequence	NA	coding protein	psRNATarget
GAER01049282.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*||||=||*||||||||||| targets:127   AACGAUUCUUAAAUAUCAACUUCA   150 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene49319 mRNA sequence	NA	coding protein	psRNATarget
EZ721690.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*||||=||*||||||||||| targets:211   AACGAUUCUUAAAUAUCAACUUCA   234 Target Full Sequence	2.5	TSA: Arachis hypogaea CL1Contig706.Arhy mRNA sequence	NA	coding protein	psRNATarget
EZ731737.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||=|**|||||=|||||||||||| targets:176   AAUGACUCUCAGUUAUCAACUUCA   199 Target Full Sequence	2.5	TSA: Arachis hypogaea CL1Contig10753.Arhy mRNA sequence	NA	coding protein	psRNATarget
EZ736828.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||=|*||=||||*||||||||||| targets:52   AAUGAUUUUCAACUAUCAACUUCA   75 Target Full Sequence	2.5	TSA: Arachis hypogaea CL2272Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
EZ730526.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||*|*||||||*||||||||||| targets:245   AACAGCUCUCAACUAUCAACUUCA   268 Target Full Sequence	2.5	TSA: Arachis hypogaea CL1Contig9542.Arhy mRNA sequence	NA	coding protein	psRNATarget
JR552149.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||**||||||*||||||||||| targets:198   AACGUCUCUCAAAUAUCAACUUCA   221 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene11811 mRNA sequence	NA	coding protein	psRNATarget
GAER01040999.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||**||||||*||||||||||| targets:134   AACGACUCUCAACUAUCAACUUCA   157 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene41030 mRNA sequence	NA	coding protein	psRNATarget
JR556801.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||*|*||||||*||||||||||| targets:234   AACAGCUCUCAACUAUCAACUUCA   257 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene16625 mRNA sequence	NA	coding protein	psRNATarget
EZ727045.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||*|*||||||*||||||||||| targets:1147   AACAGCUCUCAACUAUCAACUUCA   1170 Target Full Sequence	2.5	TSA: Arachis hypogaea CL1Contig6061.Arhy mRNA sequence	NA	coding protein	psRNATarget
GAER01025962.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||**||||||*||||||||||| targets:1322   AACGACUCUCAACUAUCAACUUCA   1345 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene25979 mRNA sequence	NA	coding protein	psRNATarget
JR557125.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||=|**||||||*||||||||||| targets:132   AAUGACUCUCAACUAUCAACUUCA   155 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene16954 mRNA sequence	NA	coding protein	psRNATarget
JR579125.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   |||**|||||||*||||||||||= targets:71   AACUAUUCUCAACUAUCAACUUCG   94 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene44202 mRNA sequence	NA	coding protein	psRNATarget
GAER01020406.1	ncRNA:24   UUGC--CAAGAGUUAAUAGUUGAAGU   1   *|||--||||||*||||||*|||||| targets:1256   UACGAGGUUCUCUAUUAUCCACUUCA   1281 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene20416 mRNA sequence	NA	coding protein	psRNATarget
JR561152.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*||=*=|||||||||||||| targets:164   AACGAUUUCUAAUUAUCAACUUCA   187 Target Full Sequence	3.0	TSA: Arachis hypogaea Ahy.Unigene21158 mRNA sequence	NA	coding protein	psRNATarget
GAER01050509.1	ncRNA:24   UUGCCAAGAGUUAAUAGUUGAAGU   1   ||||*||=*=|||||||||||||| targets:79   AACGAUUUCUAAUUAUCAACUUCA   102 Target Full Sequence	3.0	TSA: Arachis hypogaea Unigene50547 mRNA sequence	NA	coding protein	psRNATarget