A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_ahy_miR351
Species	Arachis hypogaea
Class	miRNA
Genome position	Aradu.A07:19842865-19843071 [+]
Reference genome	Aradu_v1.0
Source	SRR2922380
Length	24
Mature sequence(if miRNA)	1 - AGGUUGAUAAUCUGGAGAACAAGU - 24
Stem-loop(if miRNA)	--AG G UAUGA CG CA - - CUAUA A GUUGAUAAUCU GAGAACAAGUACAAGCUCCA ACAAAAUCAAC UGGAUGCA AAUAUAUUUAUUUAUCAUUCU CUU UAGUU GAA A \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\| A UAGCUAUUAGA CUCUUGUUCAUGUUUGAGGU UGUUUUAGUUG AUCUACGU UUAUGUAAAUAAAUAGUAAGA GAA GUUAA CUU A AUUA A CUCCG AU AG A U AUUUA U
Stem-loop sequence	AGGUUGAUAAUCUGGAGAACAAGUACAAGCUCCAUAUGAACAAAAUCAACCGUGGAUGCACAAAUAUAUUUAUUUAUCAUUCUCUUUAGUUCUAUAGAAAAAAUUUCAUUUAAAUUGUAAGAAGAAUGAUAAAUAAAUGUAUUGAUGCAUCUAUAGUUGAUUUUGUGCCUCUGGAGUUUGUACUUGUUCUCAAGAUUAUCGAUAUUA

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

GAER01027162.1

ncRNA:24	UGAA-------CAAGAGGUCUAAUAGUUGGA	1
	\|\|\|-------\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:2572	UCUUUCAGAAGGUUCUCUAGAUUUUCAACCU	2602

2.5

TSA: Arachis hypogaea Unigene27180 mRNA sequence

coding protein

GAER01027161.1

2.5

TSA: Arachis hypogaea Unigene27179 mRNA sequence

coding protein

JR560525.1

ncRNA:24	UGAA--CAAGAGGUCUAAUAGUUGGA	1
	\|=\|\|--\|\|\|**=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:971	AUUUUGGUUGAUCAGAUUAUCAACCU	996

3.0

TSA: Arachis hypogaea Ahy.Unigene20506 mRNA sequence

coding protein

GAER01024329.1

ncRNA:24	UGAA--CAAGAGGUCUAAUAGUUGGA	1
	\|=\|\|--\|\|\|**=\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:4128	AUUUUGGUUGAUCAGAUUAUCAACCU	4153

3.0

TSA: Arachis hypogaea Unigene24346 mRNA sequence

coding protein