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BaseInfo

ncRNA ID	ath-miRf10348-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - UACUCGACCUCGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	G   A                     G  G    -----  AGUGAUGGUCAGGUGAUGGAGAUGAGGAC GU AAG CACUCGACCUCGGGGUCGAGU AU UGAU     CG                             A || ||| ||||||||||||||||||||| || ||||     ||                             C CA UUU GUGAGCUGGGGCUCCAGCUCA CU UCUG     GU                             U   G   G                     U  -    UAGUG  GAAGUGGAGUGGUGAGCAGGUGCUCCAGC
Stem-loop sequence	GUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGAGAUGAGGACACUCGACCUCGUGGACGAGUGGUGAGGUGAAGUGGUGAUGUCUUCUACUCGACCUCGGGGUCGAGUGGUUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY227642.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   |||||||||||||||||||||||= targets:853   ACCACUCGACCCCGAGGUCGAGUG   876 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   |=|||||||||||||||||||||= targets:1616   AUCACUCGACCCCGAGGUCGAGUG   1639 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   ||||||||||||*||||||||||| targets:762   ACCACUCGACCCAGAGGUCGAGUA   785 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   |||||||||||*|||||||||||| targets:1525   ACCACUCGACCACGAGGUCGAGUA   1548 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   ||||||||||||||*||||||||| targets:488   ACCACUCGACCCCGUGGUCGAGUA   511 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   |||||||||||||*|||||||||| targets:1103   ACCACUCGACCCCCAGGUCGAGUA   1126 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   |*|||||||||||||||||||*|| targets:1058   AGCACUCGACCCCGAGGUCGACUA   1081 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   *|=||||||||||*|||||||||| targets:186   UCUACUCGACCCCCAGGUCGAGUA   209 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   |||||||||||*|||||||||||= targets:1149   ACCACUCGACCACGAGGUCGAGUG   1172 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   ||||||||||||||*||||||||= targets:1208   ACCACUCGACCCCGUGGUCGAGUG   1231 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
EF183005.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   =*|||||||||=|||||||||||= targets:1863   GGCACUCGACCUCGAGGUCGAGUG   1886 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   ||||*||*||||||*||||||||| targets:168   ACCAGUCAACCCCGUGGUCGAGUA   191 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   ||||*||*||||||*||||||||| targets:543   ACCAGUCAACCCCGUGGUCGAGUA   566 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAU   1   ||||*||*||||||*||||||||| targets:543   ACCAGUCAACCCCGUGGUCGAGUA   566 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   UGGU--GAGCUGGGGCUCCAGCUCAU   1   ||||--|||||||||*|||||||||= targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   UGGU--GAGCUGGGGCUCCAGCUCAU   1   ||||--|||||||||*|||||||||= targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget