Search result

BaseInfo

ncRNA ID novel_ahy_miR285
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A05:6020438-6020616 [+]
Reference genome Aradu_v1.0
Source SRR2922380
Length 23
Mature sequence(if miRNA) 157 - CAAAAGGACCUAAUUACAAAAUU - 179
Stem-loop(if miRNA) --           UUG    GUUA    ----A    A            C              ---UAAAUUAA    ACUCACAAUUAAGA
  UUUUGUAAUUA   CUUU    GUAU     AAAA UGUUAGAAUUAA GAAAUAUUUUUCUA           AAGU              A
  |||||||||||   ||||    ||||     |||| |||||||||||| ||||||||||||||           ||||
  AAAACAUUAAU   GGAA    CAUA     UUUU GCAAUUUUAAUU CUUUAUAAAAAGAU           CUAG              C
UU           CCA    --AA    CACAG    C            A              UUCUUUAUAUG    UUUCUAGAUUAAUU
Stem-loop sequence UUUUGUAAUUAUUGCUUUGUUAGUAUAAAAAAUGUUAGAAUUAACGAAAUAUUUUUCUAUAAAUUAAAAGUACUCACAAUUAAGAACUUAAUUAGAUCUUUGAUCGUAUAUUUCUUUAGAAAAAUAUUUCAUUAAUUUUAACGCUUUUGACACAUACAAAAGGACCUAAUUACAAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GAER01022228.1
ncRNA:23   UU-AAAACAUUAAUCC-AGGAAAAC   1
  ||-|||||||||||||-||||||||
targets:1121   AACUUUUGUAAUUAGGAUCCUUUUG   1145

3.0 TSA: Arachis hypogaea Unigene22239 mRNA sequence NA coding protein psRNATarget
EZ748655.1
ncRNA:23   UU-AAAACAUUAAUCC-AGGAAAAC   1
  ||-|||||||||||||-||||||||
targets:628   AACUUUUGUAAUUAGGAUCCUUUUG   652

3.0 TSA: Arachis hypogaea CL3617Contig1.Arhy mRNA sequence NA coding protein psRNATarget