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BaseInfo

ncRNA ID novel_ahy_miR260
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A03:12340089-12340304 [-]
Reference genome Aradu_v1.0
Source SRR2922380
Length 24
Mature sequence(if miRNA) 193 - CAAUUAUUUCGAAAGGACAACGAG - 216
Stem-loop(if miRNA) --C               AC        ------------      C   UUC              GAUUUGUUUGAG      UU            --A   AUAUA         ACAA
   AAUUAUUUCGAAAGG  AACGAGAU            AAAAAA ACA   AAUUCGGUUUUUGA            AUUUUU  UGGGACUGAUUA   UCU     CUAAAAAAA    C
   |||||||||||||||  ||||||||            |||||| |||   ||||||||||||||            ||||||  ||||||||||||   |||     |||||||||
   UUAAUGAAGUUUUCU  UUGCUCUA            UUUUUU UGU   UUAAGCCGAAGAUU            UAAAAA  ACCCUGAUUAAU   AGA     GGUUUUUUU    A
CUA               -A        AGAACUGUUUUU      A   ---              ---------AAA      -U            CAA   --CAC         AAUU
Stem-loop sequence CAAUUAUUUCGAAAGGACAACGAGAUAAAAAACACAUUCAAUUCGGUUUUUGAGAUUUGUUUGAGAUUUUUUUUGGGACUGAUUAAUCUAUAUACUAAAAAAAACAACAUUAAUUUUUUUGGCACAGAAACUAAUUAGUCCCAUAAAAAUAAAUUAGAAGCCGAAUUUGUAUUUUUUUUUUUGUCAAGAAUCUCGUUAUCUUUUGAAGUAAUUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JR545817.1
ncRNA:24   GAGCAACAGGAAAGCUUUAUUAAC   1
  =|||||||||||||||=|||||||
targets:62   UUCGUUGUCCUUUCGAGAUAAUUG   85

1.5 TSA: Arachis hypogaea Ahy.Unigene5243 mRNA sequence NA coding protein psRNATarget
GAER01021780.1
ncRNA:24   GAGCAACAGGAAAGCUUUAUUAAC   1
  =|||||||||||||||=|||||||
targets:60   UUCGUUGUCCUUUCGAGAUAAUUG   83

1.5 TSA: Arachis hypogaea Unigene21791 mRNA sequence NA coding protein psRNATarget