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BaseInfo

ncRNA ID	ath-miRf10341-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GUACUCGACCAGGUGGUCGA - NA
Stem-loop(if miRNA)	GAG         -AA UG  A   ---UGA  G   GAGUGAUGGUGAUGGUGGCGCGAAGU UACUCGACCA   GGUCGAGUA   U  GU GAG      AU GUC                          G ||||||||||   |||||||||   |  || |||      || ||| AUGAGCUGGU   CCAGCUCAU   A  CG UUC      GC UAC                          A           GGA         GGG GU  A   CGAUGA  -   UGUGAUGAGCUGGGGGACCAGCUCAU
Stem-loop sequence	UACUCGACCAGAGGGUCGAGUAAAUUGGUAGAGUGAAUGGUCGAGUGAUGGUGAUGGUGGCGCGAAGUGAUACUCGACCAGGGGGUCGAGUAGUGUCAUCGAGUAGCCUUAGCUGAGGGUACUCGACCAGGUGGUCGAGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183192.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||* targets:128   UCGACCCCCUGGUCGAGUAG   147 Target Full Sequence	2.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||* targets:503   UCGACCCCCUGGUCGAGUAG   522 Target Full Sequence	2.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||* targets:503   UCGACCCCCUGGUCGAGUAG   522 Target Full Sequence	2.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   *|||||*||||||||||||= targets:587   YCGACCCCCUGGUCGAGUAU   606 Target Full Sequence	2.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||= targets:312   UCGACCCCCUGGUCGAGUAU   331 Target Full Sequence	2.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||= targets:185   UCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||= targets:234   UCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||= targets:185   UCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||= targets:234   UCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||* targets:94   UCGACCCCCUGGUCGAGUAG   113 Target Full Sequence	2.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*||||||||||||* targets:1575   UCGACCCCCUGGUCGAGUAG   1594 Target Full Sequence	2.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||||||*||||||||= targets:267   UCGACCACCUUGUCGAGUAU   286 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||||||*||||||||= targets:642   UCGACCACCUUGUCGAGUAU   661 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||||||*||||||||= targets:642   UCGACCACCUUGUCGAGUAU   661 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||||||*|*||||||||||| targets:539   UCGACCCCAUGGUCGAGUAC   558 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||*|||||*||||||||||| targets:646   UCAACCACGUGGUCGAGUAC   665 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
EF183194.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   |||||||||*|||||||||* targets:453   UCGACCACCAGGUCGAGUAG   472 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
BT012022.1	ncRNA:20   AGCUGGUGGACC-AGCUCAUG   1   ||||||||||||-|||||||| targets:212   UCGACCACCUGGGUCGAGUAC   232 Target Full Sequence	3.0	Arabidopsis thaliana At2g10890 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   AGCUGGUGGACC-AGCUCAUG   1   ||||||||||||-|||||||| targets:854   UCGACCACCUGGGUCGAGUAC   874 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   AGCUGGUGGACC-AGCUCAUG   1   ||||||||||||-|||||||| targets:1181   UCGACCACCUGGGUCGAGUAC   1201 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   AGCUGGUGGACC-AGCUCAUG   1   ||||||||||||-|||||||| targets:1229   UCGACCACCUGGGUCGAGUAC   1249 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||*|||*||||||||||||= targets:305   UCAACCCCCUGGUCGAGUAU   324 Target Full Sequence	3.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   AGCUGGUGGACCAGCUCAUG   1   ||*|||*||||||||||||= targets:305   UCAACCCCCUGGUCGAGUAU   324 Target Full Sequence	3.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget