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BaseInfo

ncRNA ID	ath-miRf10340-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - CUACUCGACCUCGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	G   A                      A    A - GAGUGA G   AGGUGAUGGGAUGAAGACACAUGAGCUCGAGGUCAAGUGAUGUGGUC GU AAG CACUCGGCCUCGGGGUCGAGUG UGUG U C      U GUU                                               A || ||| |||||||||||||||||||||| |||| | |      | ||| CA UUU GUGAGCUGGGGCUCCAGCUCAU CUCG A G      U UCU                                               A   G   G                      C    - A ------ -   AGAGUUGUCUAGUGAGCUGGGGGACCAGCUCAUCUCCUGUAGUGAUG
Stem-loop sequence	GUGAAGACACUCGGCCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUUAGGUGAUGGGAUGAAGACACAUGAGCUCGAGGUCAAGUGAUGUGGUCAAGUAGUGAUGUCCUCUACUCGACCAGGGGGUCGAGUGAUCUGUUGAGAUCUUGAAGCUCCUACUCGACCUCGGGGUCGAGUGGUUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183042.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   |||||||||||*||||||||||||| targets:1525   ACCACUCGACCACGAGGUCGAGUAG   1549 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   ||||||||||||*|||||||||||| targets:762   ACCACUCGACCCAGAGGUCGAGUAG   786 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   ||||||||||||||*|||||||||| targets:488   ACCACUCGACCCCGUGGUCGAGUAG   512 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   |||||||||||||*||||||||||| targets:1103   ACCACUCGACCCCCAGGUCGAGUAG   1127 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   |*|||||||||||||||||||*||| targets:1058   AGCACUCGACCCCGAGGUCGACUAG   1082 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY227642.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   |||||||||||||||||||||||=* targets:853   ACCACUCGACCCCGAGGUCGAGUGC   877 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   |=|||||||||||||||||||||=* targets:1616   AUCACUCGACCCCGAGGUCGAGUGU   1640 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   |||||||||||*|*||||||||||| targets:448   ACCACUCGACCACCAGGUCGAGUAG   472 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   ||||*||*||||||*|||||||||| targets:168   ACCAGUCAACCCCGUGGUCGAGUAG   192 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   ||||*||*||||||*|||||||||| targets:543   ACCAGUCAACCCCGUGGUCGAGUAG   567 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   ||||*||*||||||*|||||||||| targets:543   ACCAGUCAACCCCGUGGUCGAGUAG   567 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:25   UGGUGAGCUGGGGCUCCAGCUCAUC   1   *|=||||||||||*||||||||||* targets:186   UCUACUCGACCCCCAGGUCGAGUAA   210 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget