Search result

BaseInfo

ncRNA ID novel_ahy_miR160
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A07:95948-96136 [+]
Reference genome Aradu_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - AAGAUGAAAACGCUGACAUAUGUA - 24
Stem-loop(if miRNA) --                 A      -  UACAUU    CA        C                   CCUC   U A          ----C  G  U
  AAGAUGAAAACGCUGAC UAUGUA CC      AUAU  AAACUAAA UUGUAUCUAUGCAAGAUGU    CGU U ACAAAAGUAU     CU UC U
  ||||||||||||||||| |||||| ||      ||||  |||||||| |||||||||||||||||||    ||| | ||||||||||     || ||
  UUCUAUUUUUGUGAUUG AUACAU GG      UAUA  UUUGAUUU AAUAUAGGUACGUUCUAUA    GCA A UGUUUUCAUG     GG AG U
UU                 A      A  ------    AC        A                   AAAA   C C          UAAUU  G  G
Stem-loop sequence AAGAUGAAAACGCUGACAUAUGUACCUACAUUAUAUCAAAACUAAACUUGUAUCUAUGCAAGAUGUCCUCCGUUUAACAAAAGUAUCCUGUCUUUGGAGGGUUAAUGUACUUUUGUCACACGAAAAAUAUCUUGCAUGGAUAUAAAUUUAGUUUCAAUAUGGAUACAUAAGUUAGUGUUUUUAUCUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GAER01013839.1
ncRNA:24   AUGUAUACAGUCGCAAAAGUAGAA   1
  ||||||||||||||||*|||||||
targets:35   UACAUAUGUCAGCGUUAUCAUCUU   58

1.5 TSA: Arachis hypogaea Unigene13847 mRNA sequence NA coding protein psRNATarget
GAER01020095.1
ncRNA:24   AUGUAUACAGUCGCAAAAGUAGAA   1
  |||||||*||||=|||||||||||
targets:156   UACAUAUAUCAGUGUUUUCAUCUU   179

2.5 TSA: Arachis hypogaea Unigene20104 mRNA sequence NA coding protein psRNATarget
JR572412.1
ncRNA:24   AUGUAUACAGUCGCAAAAGUAGAA   1
  |**||||*|||*||||||||||||
targets:101   UCAAUAUUUCAUCGUUUUCAUCUU   124

2.5 TSA: Arachis hypogaea Ahy.Unigene34605 mRNA sequence NA coding protein psRNATarget
GAER01029894.1
ncRNA:24   AUGUAUACAGUCGCAAAAGUAGAA   1
  |**||||*|||*||||||||||||
targets:41   UCAAUAUUUCAUCGUUUUCAUCUU   64

2.5 TSA: Arachis hypogaea Unigene29914 mRNA sequence NA coding protein psRNATarget
GAER01029895.1
ncRNA:24   AUGUAUACAGUCGCAAAAGUAGAA   1
  |**||||*|||*||||||||||||
targets:116   UCAAUAUUUCAUCGUUUUCAUCUU   139

2.5 TSA: Arachis hypogaea Unigene29915 mRNA sequence NA coding protein psRNATarget