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BaseInfo

ncRNA ID ath-miRf10329-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - UACUCGACCAGGGGGUCGAGUAGUG - NA
Stem-loop(if miRNA) U      ---        AGGG         --    G  AGA   ----A  G   G
 GAUGAU   ACUCGACC    GGUCGAGUA  ACUU GU   GCG     AU GUC A
 ||||||   ||||||||    |||||||||  |||| ||   |||     || |||
 CUACUG   UGAGCUGG    CCAGCUCAU  UGAA CG   UGU     UG UAG G
G      UGA        GGGA         AG    G  --G   GGUAG  G   U
Stem-loop sequence UGAUGAUACUCGACCAGGGGGUCGAGUAACUUGGUAGAGCGAAUGGUCGAGUGAUGGUGAUGGUGUGGCGAAGUGAUACUCGACCAGGGGGUCGAGUAGUGUCAUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT014714.1
ncRNA:25   GU-GAUGAGCUGGGGGACCAGCUCAU   1
  ||-|||||||||||||||||||||||
targets:178   CAUCUACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  |=|*|||||||||||||||||||||
targets:228   CGCCACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:25   GU-GAUGAGCUGGGGGACCAGCUCAU   1
  ||-|||||||||||||||||||||||
targets:178   CAUCUACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  |=|*|||||||||||||||||||||
targets:228   CGCCACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT025674.1
ncRNA:25   GUG--AUGAGCUGGGGGACCAGCUCAU   1
  |||--||||||||||||||||||||||
targets:304   CACCUUACUCGACCCCCUGGUCGAGUA   330

0.0 Arabidopsis thaliana NA coding protein psRNATarget
DQ069808.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  |||*|||||||||||||||||||||
targets:88   CACCACUCGACCCCCUGGUCGAGUA   112

0.0 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
EF183192.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *||*|||||||||||||||||||||
targets:122   AACCACUCGACCCCCUGGUCGAGUA   146

0.0 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *||*|||||||||||||||||||||
targets:497   AACCACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *||*|||||||||||||||||||||
targets:497   AACCACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183042.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *|=*|||||||||||||||||||||
targets:1569   GAUCACUCGACCCCCUGGUCGAGUA   1593

0.0 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  ||=|||*||||||||||||||||||
targets:581   CAUUACYCGACCCCCUGGUCGAGUA   605

1.0 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
BT014714.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  ===|||||*||||||||||||||||
targets:299   UGUUACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  ===|||||*||||||||||||||||
targets:299   UGUUACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  |||*||||||||||*||||||||||
targets:533   CACCACUCGACCCCAUGGUCGAGUA   557

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
AY231407.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *||*||||||||||*||||||||||
targets:487   GACCACUCGACCCCGUGGUCGAGUA   511

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
BT025674.1
ncRNA:25   GU-GAUGAGCUGGGGGACCAGCUCAU   1
  ||-|||||||||||||*|||||||||
targets:184   CAUCUACUCGACCCCCAGGUCGAGUA   209

1.5 Arabidopsis thaliana NA coding protein psRNATarget
NM_103391.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *||*|||||||||||*|||||||||
targets:1102   GACCACUCGACCCCCAGGUCGAGUA   1126

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT014714.1
ncRNA:25   GUG--AUGAGCUGGGGGACCAGCUCAU   1
  |||--||||||||||||*||||||||=
targets:132   CACCAUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:25   GUG--AUGAGCUGGGGGACCAGCUCAU   1
  |||--||||||||||||*||||||||=
targets:132   CACCAUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *||*|*||*|||||*||||||||||
targets:167   GACCAGUCAACCCCGUGGUCGAGUA   191

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *||*|*||*|||||*||||||||||
targets:542   GACCAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *||*|*||*|||||*||||||||||
targets:542   GACCAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:25   GUGAUGAGCUGGGGGACCAGCUCAU   1
  *||*||||||||||*|||||||||=
targets:1207   AACCACUCGACCCCGUGGUCGAGUG   1231

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
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