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BaseInfo

ncRNA ID novel_ahy_miR118
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A06:89753940-89754128 [+]
Reference genome Aradu_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 166 - UUACACUGUAAACAAGAUAAGGCU - 189
Stem-loop(if miRNA) --   UA     C          ----        A                   C         A       A      UGUGGU    UGUUU      U
  CCU  UAUCU GUUUAUAGUG    CAAAAUAA CUUGUGCAUAUCUUGUUUA ACUAUAAAC AGAUAAG CACGUU      UGCA     CUCGUU A
  |||  ||||| ||||||||||    |||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||      ||||     ||||||
  GGA  AUAGA CAAAUGUCAC    GUUUUAUU GAACACGUAUAGAGCAAAU UGAUAUUUG UCUAUUC GUGCAA      AUGU     GAGCAA U
UC   --     A          AUUU        C                   A         C       C      -----U    ----U      A
Stem-loop sequence CCUUAUAUCUCGUUUAUAGUGCAAAAUAAACUUGUGCAUAUCUUGUUUACACUAUAAACAAGAUAAGACACGUUUGUGGUUGCAUGUUUCUCGUUUAUAAACGAGUUGUAUAACGUGCCUUAUCUCGUUUAUAGUAUAAACGAGAUAUGCACAAGCUUAUUUUGUUUACACUGUAAACAAGAUAAGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GAER01058827.1
ncRNA:24   UCG-GAAUAGAACAAAUGUCACAUU   1
  *||-|*|||||*|||||||||||||
targets:78   UGCACGUAUCUCGUUUACAGUGUAA   102

1.0 TSA: Arachis hypogaea Unigene58874 mRNA sequence NA coding protein psRNATarget
JR578749.1
ncRNA:24   UCGGAAUAGAACAAAUGUCACAUU   1
  |*||||||||**||||||||||||
targets:44   AACCUUAUCUCAUUUACAGUGUAA   67

2.5 TSA: Arachis hypogaea Ahy.Unigene43542 mRNA sequence NA coding protein psRNATarget
JR574604.1
ncRNA:24   UCGGAAUAGAACAAAUGUCACAUU   1
  |**|||||||*|||||||*|||||
targets:176   AUACUUAUCUCGUUUACACUGUAA   199

2.5 TSA: Arachis hypogaea Ahy.Unigene37641 mRNA sequence NA coding protein psRNATarget
JR574604.1
ncRNA:24   UCGGAAUAGAACAAAUGUCACAUU   1
  *|*=||||||**||||||||||||
targets:22   UGGUUUAUCUCAUUUACAGUGUAA   45

2.5 TSA: Arachis hypogaea Ahy.Unigene37641 mRNA sequence NA coding protein psRNATarget