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BaseInfo

ncRNA ID novel_ahy_miR116
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A01:56903221-56903427 [-]
Reference genome Aradu_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - GAUUUUAAAUAAUAAUAUCGACGG - 24
Stem-loop(if miRNA) --      U      AG     U       G AACG        --UUU      GCACAU            AGC      -    UUAAAC   UU  A      
  GUUGAU UUAUUA  UUAAA AUUGACG C    UUGUCGAU     AUUCAA      AUCGACGGCUUU   GUCGAU UUUA      AUA  AU GACAACA
  |||||| ||||||  ||||| ||||||| |    ||||||||     ||||||      ||||||||||||   |||||| ||||      |||  || ||||||G
  CAGCUA AAUAAU  AAUUU UAGCUGC G    AACAGCUA     UAAGUU      UAGCUGUCGGAA   CAGCUA AAAU      UAU  UA UUGUUGU
GG      U      -A     -       A GAAA        UUAAC      --AUUU            AAA      U    -UGAAU   UU  G      
Stem-loop sequence GUUGAUUUUAUUAAGUUAAAUAUUGACGGCAACGUUGUCGAUUUUAUUCAAGCACAUAUCGACGGCUUUAGCGUCGAUUUUAUUAAACAUAUUAUAGACAACAGUGUUGUUGAUUUUAUUAAGUUAAAUAUCGACAAAAAGGCUGUCGAUUUUAUUGAAUCAAUUAUCGACAAAAAGGACGUCGAUUUUAAAUAAUAAUAUCGACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JR554516.1
ncRNA:24   GGCAGCUAUAAUAAUAAAUUUUAG   1
  ***||*|||||*||||||||||||
targets:792   AGCUCUAUAUUUUUAUUUAAAAUC   815

2.5 TSA: Arachis hypogaea Ahy.Unigene14289 mRNA sequence NA coding protein psRNATarget