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BaseInfo

ncRNA ID	novel_ahy_miR99
Species	Arachis hypogaea
Class	miRNA
Genome position	Aradu.A05:2078962-2079046 [-]
Reference genome	Aradu_v1.0
Source	SRR1323745
Length	24
Mature sequence(if miRNA)	62 - UGAAGUUGAUAGUUGAGAGCGGUU - 85
Stem-loop(if miRNA)	--           GU      CG   --UAAAU             UGAAGUUGAUA  UGAGAG  GUU       AAUUUAAUUGA   |||||||||||  ||||||  |||       ||||||||||U   ACUUUAAUUAU  ACUCUC  CAA       UUAAAUUGAUU UC           UG      AA   UCUAUUU
Stem-loop sequence	UGAAGUUGAUAGUUGAGAGCGGUUUAAAUAAUUUAAUUGAUUUAGUUAAAUUUUUAUCUAACAACUCUCAGUUAUUAAUUUCACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ730526.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*|||||||||||||||||||| targets:245   AACAGCUCUCAACUAUCAACUUCA   268 Target Full Sequence	0.0	TSA: Arachis hypogaea CL1Contig9542.Arhy mRNA sequence	NA	coding protein	psRNATarget
JR556801.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*|||||||||||||||||||| targets:234   AACAGCUCUCAACUAUCAACUUCA   257 Target Full Sequence	0.0	TSA: Arachis hypogaea Ahy.Unigene16625 mRNA sequence	NA	coding protein	psRNATarget
EZ727045.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*|||||||||||||||||||| targets:1147   AACAGCUCUCAACUAUCAACUUCA   1170 Target Full Sequence	0.0	TSA: Arachis hypogaea CL1Contig6061.Arhy mRNA sequence	NA	coding protein	psRNATarget
GAER01040999.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||**||||||||||||||||||| targets:134   AACGACUCUCAACUAUCAACUUCA   157 Target Full Sequence	0.0	TSA: Arachis hypogaea Unigene41030 mRNA sequence	NA	coding protein	psRNATarget
GAER01025962.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||**||||||||||||||||||| targets:1322   AACGACUCUCAACUAUCAACUUCA   1345 Target Full Sequence	0.0	TSA: Arachis hypogaea Unigene25979 mRNA sequence	NA	coding protein	psRNATarget
JR557125.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   ||=**||||||||||||||||||| targets:132   AAUGACUCUCAACUAUCAACUUCA   155 Target Full Sequence	0.0	TSA: Arachis hypogaea Ahy.Unigene16954 mRNA sequence	NA	coding protein	psRNATarget
EZ750777.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*|=|||||||||||||||||| targets:93   AACAGUUCUCAACUAUCAACUUCA   116 Target Full Sequence	1.0	TSA: Arachis hypogaea CL16137Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
EZ745548.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   ||=**||||||||||||||||||= targets:313   AAUGACUCUCAACUAUCAACUUCG   336 Target Full Sequence	1.0	TSA: Arachis hypogaea CL7522Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
JR581646.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*||||||||=||||||||||| targets:118   AACGGCUCUCAAUUAUCAACUUCA   141 Target Full Sequence	1.5	TSA: Arachis hypogaea Ahy.Unigene47526 mRNA sequence	NA	coding protein	psRNATarget
JR570139.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*|||||||=|||||||||||| targets:210   AACGGCUCUCAGCUAUCAACUUCA   233 Target Full Sequence	1.5	TSA: Arachis hypogaea Ahy.Unigene30458 mRNA sequence	NA	coding protein	psRNATarget
EZ723307.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*||||||||=||||||||||| targets:189   AACGGCUCUCAAUUAUCAACUUCA   212 Target Full Sequence	1.5	TSA: Arachis hypogaea CL1Contig2323.Arhy mRNA sequence	NA	coding protein	psRNATarget
GAER01053760.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*||||||||=||||||||||| targets:105   AACGGCUCUCAAUUAUCAACUUCA   128 Target Full Sequence	1.5	TSA: Arachis hypogaea Unigene53800 mRNA sequence	NA	coding protein	psRNATarget
GAER01028527.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*|||||||=|||||||||||| targets:127   AACGGCUCUCAGCUAUCAACUUCA   150 Target Full Sequence	1.5	TSA: Arachis hypogaea Unigene28545 mRNA sequence	NA	coding protein	psRNATarget
JR574792.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||**||||||||||||||=|||| targets:140   AACGACUCUCAACUAUCAAUUUCA   163 Target Full Sequence	1.5	TSA: Arachis hypogaea Ahy.Unigene37829 mRNA sequence	NA	coding protein	psRNATarget
GAER01047966.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||**||||||||||||||=|||| targets:37   AACGACUCUCAACUAUCAAUUUCA   60 Target Full Sequence	1.5	TSA: Arachis hypogaea Unigene48002 mRNA sequence	NA	coding protein	psRNATarget
JR552149.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||**|||||||*||||||||||| targets:198   AACGUCUCUCAAAUAUCAACUUCA   221 Target Full Sequence	1.5	TSA: Arachis hypogaea Ahy.Unigene11811 mRNA sequence	NA	coding protein	psRNATarget
JR561947.1	ncRNA:23   UGGCGAGAGUUGAUAGUUGAAGU   1   |=**||||||=|||||||||||| targets:1   AUGACUCUCAGCUAUCAACUUCA   23 Target Full Sequence	1.5	TSA: Arachis hypogaea Ahy.Unigene21974 mRNA sequence	NA	coding protein	psRNATarget
JR556621.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*|=|=|||||||||||||||| targets:365   AACGGUUUUCAACUAUCAACUUCA   388 Target Full Sequence	2.0	TSA: Arachis hypogaea Ahy.Unigene16439 mRNA sequence	NA	coding protein	psRNATarget
JR579125.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||=*=|||||||||||||||||= targets:71   AACUAUUCUCAACUAUCAACUUCG   94 Target Full Sequence	2.0	TSA: Arachis hypogaea Ahy.Unigene44202 mRNA sequence	NA	coding protein	psRNATarget
JR550778.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||**=|||=|||||||||||||| targets:110   AACGAUUCUUAACUAUCAACUUCA   133 Target Full Sequence	2.0	TSA: Arachis hypogaea Ahy.Unigene10402 mRNA sequence	NA	coding protein	psRNATarget
EZ736828.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   ||=**=|=|||||||||||||||| targets:52   AAUGAUUUUCAACUAUCAACUUCA   75 Target Full Sequence	2.0	TSA: Arachis hypogaea CL2272Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
JR551010.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |=|*|||=|||=|||||||||||| targets:86   AGCAGCUUUCAGCUAUCAACUUCA   109 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene10638 mRNA sequence	NA	coding protein	psRNATarget
JR546132.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   ||==|||=||||*||||||||||| targets:118   AAUUGCUUUCAAGUAUCAACUUCA   141 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene5573 mRNA sequence	NA	coding protein	psRNATarget
JR587878.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |*|||=|||||||||*|||||||| targets:41   AUCCGUUCUCAACUAACAACUUCA   64 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene56306 mRNA sequence	NA	coding protein	psRNATarget
EZ738611.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*|||||=||*||||||||||| targets:23   AACAGCUCUUAAAUAUCAACUUCA   46 Target Full Sequence	2.5	TSA: Arachis hypogaea CL11619Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
GAER01015443.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*||||*||=|||||||||||| targets:204   AACGGCUCCCAGCUAUCAACUUCA   227 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene15451 mRNA sequence	NA	coding protein	psRNATarget
EZ722257.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*||||*||=|||||||||||| targets:182   AACGGCUCCCAGCUAUCAACUUCA   205 Target Full Sequence	2.5	TSA: Arachis hypogaea CL1Contig1273.Arhy mRNA sequence	NA	coding protein	psRNATarget
JR554492.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||**=||||||||||||||||=| targets:2430   AACGAUUCUCAACUAUCAACUUUA   2453 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene14265 mRNA sequence	NA	coding protein	psRNATarget
GAER01034499.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||**=||||||||||||||||=| targets:2457   AACGAUUCUCAACUAUCAACUUUA   2480 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene34522 mRNA sequence	NA	coding protein	psRNATarget
JR584453.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   ||=**||=|||=|||||||||||| targets:3   AAUAACUUUCAGCUAUCAACUUCA   26 Target Full Sequence	2.5	TSA: Arachis hypogaea Ahy.Unigene50333 mRNA sequence	NA	coding protein	psRNATarget
GAER01039538.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   ||=**||=||||||||||||||=| targets:455   AAUGACUUUCAACUAUCAACUUUA   478 Target Full Sequence	2.5	TSA: Arachis hypogaea Unigene39565 mRNA sequence	NA	coding protein	psRNATarget
EZ747471.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |*|=**||||||||=||||||||| targets:590   AUCUAAUCUCAACUGUCAACUUCA   613 Target Full Sequence	2.5	TSA: Arachis hypogaea CL20093Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget
EZ748362.1	ncRNA:24   UUGGCGAGAGUUGAUAGUUGAAGU   1   |||*-=|=|||||||||||||||* targets:841   AACA-UUUUCAACUAUCAACUUCU   863 Target Full Sequence	3.0	TSA: Arachis hypogaea CL2420Contig1.Arhy mRNA sequence	NA	coding protein	psRNATarget