Search result

BaseInfo

ncRNA ID novel_ahy_miR50
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A01:9772256-9772464 [+]
Reference genome Aradu_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - AUUAACUGAUAGCAUAUAUGACAC - 24
Stem-loop(if miRNA) --A    C      C        C  AUAAC    -  -    AUAA             A    CA     C   C  U       --------------CU         U
   UUAA UGAUAG AUAUAUGA AC     AUAU UC AAUU    GUUGACUAAAUAU UUUA  AAAAU UAU AA UUAGUCA                AGAUCAUAU A
   |||| |||||| |||||||| ||     |||| || ||||    ||||||||||||| ||||  ||||| ||| || |||||||                ||||||||| G
   AAUU ACUAUU UAUAUAUU UG     UAUA AG UUAA    UAACUGGUUUAUA GAAU  UUUUA AUA UU AAUCAGU                UUUAGUAUA G
UAC    A      A        A  --AAA    C  A    CCUA             C    AC     A   A  C       AAAAGAGGUUAAUGUU         A
Stem-loop sequence AUUAACUGAUAGCAUAUAUGACACAUAACAUAUUCAAUUAUAAGUUGACUAAAUAUAUUUACAAAAAUCUAUCAAUUUAGUCACUAGAUCAUAUUAGGAAUAUGAUUUUUGUAAUUGGAGAAAAUGACUAACUUAAUAAAUUUUCAUAAGCAUAUUUGGUCAAUAUCCAAUUAGACAUAUAAAGUAUUAUAUAUAUUAUCAAUUAACAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ747421.1
ncRNA:24   CACAGUAUAUACGAUAGUCAAUUA   1
  |||||||=||||||||||||||||
targets:725   GUGUCAUGUAUGCUAUCAGUUAAU   748

1.0 TSA: Arachis hypogaea CL19737Contig1.Arhy mRNA sequence NA coding protein psRNATarget
GAER01049126.1
ncRNA:24   CACAGUAUAUACGAUAGUCAAUUA   1
  *|||=*|||||||||||||||||*
targets:47   UUGUUUUAUAUGCUAUCAGUUAAA   70

2.0 TSA: Arachis hypogaea Unigene49163 mRNA sequence NA coding protein psRNATarget
EZ735986.1
ncRNA:24   CACAGUAUAUACGAUAGUCAAUUA   1
  *|||=*|||||||||||||||||*
targets:18   UUGUUUUAUAUGCUAUCAGUUAAA   41

2.0 TSA: Arachis hypogaea CL1Contig15002.Arhy mRNA sequence NA coding protein psRNATarget