Search result

BaseInfo

ncRNA ID	ath-miRf10320-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CGUCAUCUUCCAAUUCGUCC - NA
Stem-loop(if miRNA)	G   --     -CCA          -GUG   UU AGA      GA G   A GGGA UUA  GACGA    GAAGAUGGCG    ACG  U   GGGCUG  U GUC U |||| |||  |||||    ||||||||||    |||  |   ||||||  | ||| CUCU AAU  CUGCU    CUUCUACUGC    UGU  A   UUCGAC  G UAG G     G   CC     UAAC          AGUA   GG --A      GA G   U
Stem-loop sequence	GGGAGUUAGACGACCAGAAGAUGGCGGUGACGUUUAGAGGGCUGGAUGGUCAUGUGAUGGAGCAGCUUAAGGUGUAUGACGUCAUCUUCCAAUUCGUCCCUAAGUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001333075.1	ncRNA:20   CCUGCUUAACCUUCUACUGC   1   *||=|*|||||||||||||| targets:666   AGAUGUAUUGGAAGAUGACG   685 Target Full Sequence	2.0	Arabidopsis thaliana P-loop containing nucleoside triphosphate hydrolases superfamily protein (AIG1), mRNA	P-loop containing nucleoside triphosphate hydrolases superfamily protein(AIG1)	coding protein	psRNATarget
NM_103118.4	ncRNA:20   CCUGCUUAACCUUCUACUGC   1   *||=|*|||||||||||||| targets:572   AGAUGUAUUGGAAGAUGACG   591 Target Full Sequence	2.0	Arabidopsis thaliana P-loop containing nucleoside triphosphate hydrolases superfamily protein (AIG1), mRNA	P-loop containing nucleoside triphosphate hydrolases superfamily protein(AIG1)	coding protein	psRNATarget
AK176629.1	ncRNA:20   CCUGCUUAACCUUCUACUGC   1   *||=|*|||||||||||||| targets:572   AGAUGUAUUGGAAGAUGACG   591 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for AIG1, complete cds, clone: RAFL25-16-O07	NA	coding protein	psRNATarget
U40856.1	ncRNA:20   CCUGCUUAACCUUCUACUGC   1   *||=|*|||||||||||||| targets:555   AGAUGUAUUGGAAGAUGACG   574 Target Full Sequence	2.0	Arabidopsis thaliana AIG1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_112724.4	ncRNA:20   CCUGCUUAACCUUCUACUGC   1   ||||||**|||||||||||| targets:554   GGACGAUGUGGAAGAUGACG   573 Target Full Sequence	2.5	Arabidopsis thaliana CRS1 / YhbY (CRM) domain-containing protein (EMB1865), mRNA	CRS1 / YhbY (CRM) domain-containing protein(EMB1865)	coding protein	psRNATarget
AY063908.1	ncRNA:20   CCUGCUUAACCUUCUACUGC   1   ||||||**|||||||||||| targets:540   GGACGAUGUGGAAGAUGACG   559 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At3g18390) mRNA, complete cds	NA	coding protein	psRNATarget
NM_111001.2	ncRNA:20   CCUGCUUAACCUUCUACUGC   1   **|*|=|||||||||||||| targets:972   CAAAGGAUUGGAAGAUGACG   991 Target Full Sequence	3.0	Arabidopsis thaliana Major facilitator superfamily protein partial mRNA	Major facilitator superfamily protein(AT3G01350)	coding protein	psRNATarget