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BaseInfo

ncRNA ID novel_ahy_miR24
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A09:104766865-104766997 [-]
Reference genome Aradu_v1.0
Source SRR1323745;SRR2922380;SRR2922381
Length 22
Mature sequence(if miRNA) 112 - GGAGUGAAACUGAGAACACAAA - 133
Stem-loop(if miRNA) --  A    AA            A        UUUUG          -----       AUC   U    UUA
  GG GUGA  CUGAGAACACAA GUAAAUUG     GAGUUUGGAA     UGCCAUA   ACA GCAU   U
  || ||||  |||||||||||| ||||||||     ||||||||||     |||||||   ||| ||||
  CC CACU  GACUCUUGUGUU CAUUUAAU     UUUAAGCUUU     AUGGUAU   UGU CGUA   G
UU  C    -G            C        -----          UAUAC       --A   U    UUG
Stem-loop sequence GGAGUGAAACUGAGAACACAAAGUAAAUUGUUUUGGAGUUUGGAAUGCCAUAAUCACAUGCAUUUAUGGUUAUGCUUGUAUAUGGUACAUAUUUUCGAAUUUUAAUUUACCUUGUGUUCUCAGGUCACCCCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JR589144.1
ncRNA:22   AAACACAAGAGUCAAAGUGAGG   1
  ***|||||||||*|||||||||
targets:137   CCGGUGUUCUCACUUUCACUCC   158

1.5 TSA: Arachis hypogaea Ahy.Unigene57572 mRNA sequence NA coding protein psRNATarget
JR541936.1
ncRNA:22   AAACACAAGAGUCAAAGUGAGG   1
  *|***||||||||||||||||*
targets:1575   CUAACGUUCUCAGUUUCACUCG   1596

3.0 TSA: Arachis hypogaea Ahy.Unigene1264 mRNA sequence NA coding protein psRNATarget
GAER01029474.1
ncRNA:22   AAACACAAGAGUCAAAGUGAGG   1
  *|***||||||||||||||||*
targets:1424   CUAACGUUCUCAGUUUCACUCG   1445

3.0 TSA: Arachis hypogaea Unigene29494 mRNA sequence NA coding protein psRNATarget