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BaseInfo

ncRNA ID novel_ahy_miR21
Species Arachis hypogaea
Class miRNA
Genome position Aradu.A03:25980432-25980639 [+]
Reference genome Aradu_v1.0
Source SRR1323745
Length 24
Mature sequence(if miRNA) 1 - UUAACUGAUAGCAUAUAUGACACA - 24
Stem-loop(if miRNA) --    C   -   C        C  AUAAC     CC   A  CG  C              C      C      A   A  ACCAGGUCAUA   GUAAUAAGAUU
  UUAA UGA UAG AUAUAUGA AC     AUGUU  AUU GA  UU ACUAAAUAUGUUUA GAAAAU UAUUAA UUA UC           UUA           U
  |||| ||| ||| |||||||| ||     |||||  ||| ||  || |||||||||||||| |||||| |||||| ||| ||           |||
  AAUU ACU AUU UAUAUAUU UG     UAUAG  UAA CU  AA UGAUUUAUAUAAAU CUUUUA AUAAUU AAU AG           AAA           U
GC    A   U   A        A  AACUA     AU   C  AU  U              A      A      A   C  ---------CA   AAAGUUAAUGU
Stem-loop sequence UUAACUGAUAGCAUAUAUGACACAUAACAUGUUCCAUUAGACGUUCACUAAAUAUGUUUACGAAAAUCUAUUAAAUUAAUCACCAGGUCAUAUUAGUAAUAAGAUUUUUGUAAUUGAAAAAAACGACUAAAUUAAUAAAUUUUCAUAAAUAUAUUUAGUUAAUAUCCAAUUAGAUAUAUCAAGUAUUAUAUAUAUUAUUCAAUUAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ747421.1
ncRNA:24   ACACAGUAUAUACGAUAGUCAAUU   1
  ||||||||=|||||||||||||||
targets:724   UGUGUCAUGUAUGCUAUCAGUUAA   747

1.0 TSA: Arachis hypogaea CL19737Contig1.Arhy mRNA sequence NA coding protein psRNATarget
GAER01049126.1
ncRNA:24   AC--ACAGUAUAUACGAUAGUCAAUU   1
  ||--|||=*|||||||||||||||||
targets:44   UGAUUGUUUUAUAUGCUAUCAGUUAA   69

2.0 TSA: Arachis hypogaea Unigene49163 mRNA sequence NA coding protein psRNATarget
EZ735986.1
ncRNA:24   ACACAGUAUAUACGAUAGUCAAUU   1
  **|||=*|||||||||||||||||
targets:17   AUUGUUUUAUAUGCUAUCAGUUAA   40

2.0 TSA: Arachis hypogaea CL1Contig15002.Arhy mRNA sequence NA coding protein psRNATarget