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BaseInfo

ncRNA ID	ath-miRf10317-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - GAGAACGCGUCGUCGACGAGU - NA
Stem-loop(if miRNA)	CC    A     AA       G C    AAAU G  U    -    -     --    -AA     -A  GCAUUAAG   GGCU GUCGA  GCGCGUU C CAAA    U UG CGGU CGGA UCGCU  GAGA   AAACG  GC        G   |||| |||||  ||||||| | ||||    | || |||| |||| |||||  ||||   |||||  ||   UUGA CAGCU  UGCGCAA G GUUU    A AC GCUA GCUU AGCGG  UUCU   UUUGC  UG        U GA    G     GC       - A    ---- G  U    U    G     GC    GAG     AC  AUAUAAAA
Stem-loop sequence	CCGGCUAGUCGAAAGCGCGUUGCCCAAAAAAUUGUGUCGGUCGGAUCGCUGAGAAAAAACGAGCGCAUUAAGGUAAAAUAUAGUCACGUUUGAGUCUUCGGGCGAGUUCGUAUCGUCAGAUUUGAGAACGCGUCGUCGACGAGUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_129125.2	ncRNA:21   UGAGCAGCUGCUGCGCAAGAG   1   ||||**||||||||||||||| targets:609   ACUCUCCGACGACGCGUUCUC   629 Target Full Sequence	2.0	Arabidopsis thaliana ERF family protein 38 (ERF38), mRNA	ERF family protein 38(ERF38)	coding protein	psRNATarget
BT025754.1	ncRNA:21   UGAGCAGCUGCUGCGCAAGAG   1   ||||**||||||||||||||| targets:468   ACUCUCCGACGACGCGUUCUC   488 Target Full Sequence	2.0	Arabidopsis thaliana At2g35700 mRNA, complete cds	NA	coding protein	psRNATarget
DQ653042.1	ncRNA:21   UGAGCAGCUGCUGCGCAAGAG   1   ||||**||||||||||||||| targets:468   ACUCUCCGACGACGCGUUCUC   488 Target Full Sequence	2.0	Arabidopsis thaliana clone 0000016552_0000011552 unknown mRNA	NA	coding protein	psRNATarget
DQ446600.1	ncRNA:21   UGAGCAGCUGCUGCGCAAGAG   1   ||||**||||||||||||||| targets:468   ACUCUCCGACGACGCGUUCUC   488 Target Full Sequence	2.0	Arabidopsis thaliana clone pENTR221-At2g35700 AP2 domain-containing transcription factor (At2g35700) mRNA, complete cds	NA	coding protein	psRNATarget
AY560845.1	ncRNA:21   UGAGCAGCUGCUGCGCAAGAG   1   ||||**||||||||||||||| targets:468   ACUCUCCGACGACGCGUUCUC   488 Target Full Sequence	2.0	Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g35700) mRNA, complete cds	NA	coding protein	psRNATarget
NM_117777.3	ncRNA:21   UGAGCAGCUGCUGCGCAAGAG   1   |*|||*|||||||||*||||| targets:614   AGUCGCCGACGACGCUUUCUC   634 Target Full Sequence	2.5	Arabidopsis thaliana Integrase-type DNA-binding superfamily protein mRNA	Integrase-type DNA-binding superfamily protein(AT4G16750)	coding protein	psRNATarget
BT011576.1	ncRNA:21   UGAGCAGCUGCUGCGCAAGAG   1   |*|||*|||||||||*||||| targets:516   AGUCGCCGACGACGCUUUCUC   536 Target Full Sequence	2.5	Arabidopsis thaliana At4g16750 mRNA, complete cds	NA	coding protein	psRNATarget
BT020592.1	ncRNA:21   UGAGCAGCUGCUGCGCAAGAG   1   |*|||*|||||||||*||||| targets:417   AGUCGCCGACGACGCUUUCUC   437 Target Full Sequence	2.5	Arabidopsis thaliana At4g16750 gene, complete cds	NA	coding protein	psRNATarget
AY560874.1	ncRNA:21   UGAGCAGCUGCUGCGCAAGAG   1   |*|||*|||||||||*||||| targets:417   AGUCGCCGACGACGCUUUCUC   437 Target Full Sequence	2.5	Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g16750) mRNA, complete cds	NA	coding protein	psRNATarget