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BaseInfo

ncRNA ID zma-miR444b
Species Zea mays
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - UGCAGUUGUUGUCUCAAGCUU - NA
Stem-loop(if miRNA) UGA      A                 U               GUUU   AAC
   CGAGCU GAGGCAGCAACUGCAUA CUUGCAAGAAAAUUG    UCG   C
   |||||| ||||||||||||||||| |||||||||||||||    |||
   GUUCGA CUCUGUUGUUGACGUGU GAACGUUCUUUUAAU    AGC   A
GUC      A                 U               ----   CAU
Stem-loop sequence UGACGAGCUAGAGGCAGCAACUGCAUAUCUUGCAAGAAAAUUGGUUUUCGAACCAUACCGAUAAUUUUCUUGCAAGUUGUGCAGUUGUUGUCUCAAGCUUGCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001111456.2
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:295   AAGCUUGAGACAACAACUGCA   315

0.0 Zea mays MADS2 (zmm2), mRNA NA coding protein psRNATarget
BT084106.2
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:770   AAGCUUGAGACAACAACUGCA   790

0.0 Zea mays full-length cDNA clone ZM_BFb0075P23 mRNA, complete cds NA coding protein psRNATarget
XM_008671096.2
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:554   AAGCUUGAGACAACAACUGCA   574

0.0 PREDICTED: Zea mays MADS-box transcription factor 27 (LOC103646360), transcript variant X2, mRNA NA coding protein psRNATarget
AF112149.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:564   AAGCUUGAGACAACAACUGCA   584

0.0 Zea mays MADS box protein 2 (mads2) mRNA, complete cds NA coding protein psRNATarget
XM_020552601.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:654   AAGCUUGAGACAACAACUGCA   674

0.0 PREDICTED: Zea mays MADS-box transcription factor 27 (LOC103655506), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008671095.2
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:552   AAGCUUGAGACAACAACUGCA   572

0.0 PREDICTED: Zea mays MADS-box transcription factor 27 (LOC103646360), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552600.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:650   AAGCUUGAGACAACAACUGCA   670

0.0 PREDICTED: Zea mays MADS-box transcription factor 27 (LOC103655506), transcript variant X1, mRNA NA coding protein psRNATarget
AY110941.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:634   AAGCUUGAGACAACAACUGCA   654

0.0 Zea mays CL676_1 mRNA sequence NA coding protein psRNATarget
BT084752.2
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:1048   AAGCUUGAGACAACAACUGCA   1068

0.0 Zea mays full-length cDNA clone ZM_BFb0174B16 mRNA, complete cds NA coding protein psRNATarget
BT065873.2
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||||||||||||||
targets:1307   AAGCUUGAGACAACAACUGCA   1327

0.0 Zea mays full-length cDNA clone ZM_BFc0165G09 mRNA, complete cds NA coding protein psRNATarget
JB169889.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||=|||||||||||
targets:11   AAGCUUGAGGCAACAACUGCA   31

1.5 Sequence 7553 from Patent EP2559767 NA coding protein psRNATarget
HI409428.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||=|||||||||||
targets:11   AAGCUUGAGGCAACAACUGCA   31

1.5 Sequence 7553 from Patent EP2074227 NA coding protein psRNATarget
LQ241558.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||||||=|||||||||||
targets:11   AAGCUUGAGGCAACAACUGCA   31

1.5 Sequence 7553 from Patent EP2985353 NA coding protein psRNATarget
JB167718.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||*|||||||||||||||
targets:4   AAGCUCGAGACAACAACUGCA   24

1.0 Sequence 5382 from Patent EP2559767 NA coding protein psRNATarget
LQ239387.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||*|||||||||||||||
targets:4   AAGCUCGAGACAACAACUGCA   24

1.0 Sequence 5382 from Patent EP2985353 NA coding protein psRNATarget
HI407257.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||*|||||||||||||||
targets:4   AAGCUCGAGACAACAACUGCA   24

1.0 Sequence 5382 from Patent EP2074227 NA coding protein psRNATarget
EU948115.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  |||||*|||||||||||||||
targets:139   AAGCUCGAGACAACAACUGCA   159

1.0 Zea mays clone 370016 mRNA sequence NA coding protein psRNATarget
XM_020551222.1
ncRNA:21   UUCGAACUCUGUUGUUGACGU   1
  ***||||=|||||||||||||
targets:1460   UUUCUUGGGACAACAACUGCA   1480

2.0 PREDICTED: Zea mays DNA-directed RNA polymerase V subunit 1-like (LOC103649547), mRNA NA coding protein psRNATarget

Reference

1 PMID:21421552
"SplamiR--prediction of spliced miRNAs in plants";
Thieme CJ, Gramzow L, Lobbes D, Theissen G;
Bioinformatics. 27:1215-1223(2011).
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