Search result

BaseInfo

ncRNA ID zma-miR166g-5p
Species Zea mays
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - GGAAUGUUGUCUGGUUGGAGA - NA
Stem-loop(if miRNA)         UU        G       AA    RCGAAUUA     C    CC     A    - AUA
GGGGAAUG  GUCUGGUU GAGACCU  CACC        AUCAU CAUG  AUGGA GCAG C   U
||||||||  |||||||| |||||||  ||||        ||||| ||||  ||||| |||| |
CCCCUUAC  CGGACCAG CUUUGGA  GUGG        UAGUA GUAC  UAUCU CGUC G   G
        UU        G       AG    --------     C    -C     A    C CCC
Stem-loop sequence GGGGAAUGUUGUCUGGUUGGAGACCUAACACCRCGAAUUAAUCAUCCAUGCCAUGGAAGCAGCAUAUGCCCGCCUGCAUCUAUCCAUGCAUGAUGGUGGAAGGUUUCGGACCAGGCUUCAUUCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163898.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |||||||||||||||||||||
targets:114   UCUCCAACCAGACAACAUUCC   134

0.0 Sequence 1562 from Patent EP2559767 NA coding protein psRNATarget
HI403437.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |||||||||||||||||||||
targets:114   UCUCCAACCAGACAACAUUCC   134

0.0 Sequence 1562 from Patent EP2074227 NA coding protein psRNATarget
JB163592.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |||||||||||||||||||||
targets:114   UCUCCAACCAGACAACAUUCC   134

0.0 Sequence 1256 from Patent EP2559767 NA coding protein psRNATarget
HI403131.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |||||||||||||||||||||
targets:114   UCUCCAACCAGACAACAUUCC   134

0.0 Sequence 1256 from Patent EP2074227 NA coding protein psRNATarget
LQ235567.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |||||||||||||||||||||
targets:114   UCUCCAACCAGACAACAUUCC   134

0.0 Sequence 1562 from Patent EP2985353 NA coding protein psRNATarget
LQ235261.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |||||||||||||||||||||
targets:114   UCUCCAACCAGACAACAUUCC   134

0.0 Sequence 1256 from Patent EP2985353 NA coding protein psRNATarget
JB163871.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

2.0 Sequence 1535 from Patent EP2559767 NA coding protein psRNATarget
JB163569.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

2.0 Sequence 1233 from Patent EP2559767 NA coding protein psRNATarget
HI408663.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

2.0 Sequence 6788 from Patent EP2074227 NA coding protein psRNATarget
LQ235238.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

2.0 Sequence 1233 from Patent EP2985353 NA coding protein psRNATarget
HI403108.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

2.0 Sequence 1233 from Patent EP2074227 NA coding protein psRNATarget
JB169124.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

2.0 Sequence 6788 from Patent EP2559767 NA coding protein psRNATarget
HI403410.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

2.0 Sequence 1535 from Patent EP2074227 NA coding protein psRNATarget
LQ240793.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

2.0 Sequence 6788 from Patent EP2985353 NA coding protein psRNATarget
LQ235540.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

2.0 Sequence 1535 from Patent EP2985353 NA coding protein psRNATarget
LQ235265.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *||=*||||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

2.0 Sequence 1260 from Patent EP2985353 NA coding protein psRNATarget
JB163904.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *||=*||||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

2.0 Sequence 1568 from Patent EP2559767 NA coding protein psRNATarget
HI403443.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *||=*||||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

2.0 Sequence 1568 from Patent EP2074227 NA coding protein psRNATarget
JB163596.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *||=*||||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

2.0 Sequence 1260 from Patent EP2559767 NA coding protein psRNATarget
LQ235573.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *||=*||||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

2.0 Sequence 1568 from Patent EP2985353 NA coding protein psRNATarget
HI403135.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *||=*||||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

2.0 Sequence 1260 from Patent EP2074227 NA coding protein psRNATarget
JB163948.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=|||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

3.0 Sequence 1612 from Patent EP2559767 NA coding protein psRNATarget
JB163644.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=|||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

3.0 Sequence 1308 from Patent EP2559767 NA coding protein psRNATarget
HI403183.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=|||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

3.0 Sequence 1308 from Patent EP2074227 NA coding protein psRNATarget
LQ235313.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=|||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

3.0 Sequence 1308 from Patent EP2985353 NA coding protein psRNATarget
LQ235617.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=|||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

3.0 Sequence 1612 from Patent EP2985353 NA coding protein psRNATarget
HI403487.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  *|||*|=|||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

3.0 Sequence 1612 from Patent EP2074227 NA coding protein psRNATarget
EU952226.1
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  **|||=||*||||||||||||
targets:194   AAUCCGACAAGACAACAUUCC   214

2.5 Zea mays clone 1231083 photosystem I reaction center subunit XI mRNA, complete cds NA coding protein psRNATarget
XM_008669095.2
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |**|||||||||*||||||||
targets:688   UGACCAACCAGAGAACAUUCC   708

2.5 PREDICTED: Zea mays Ypt/Rab-GAP domain of gyp1p superfamily protein (LOC100216563), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001142983.2
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |**|||||||||*||||||||
targets:820   UGACCAACCAGAGAACAUUCC   840

2.5 Zea mays Ypt/Rab-GAP domain of gyp1p superfamily protein (LOC100216563), mRNA NA coding protein psRNATarget
BT036959.2
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |**|||||||||*||||||||
targets:820   UGACCAACCAGAGAACAUUCC   840

2.5 Zea mays full-length cDNA clone ZM_BFb0148P07 mRNA, complete cds NA coding protein psRNATarget
XM_008669094.2
ncRNA:21   AGAGGUUGGUCUGUUGUAAGG   1
  |**|||||||||*||||||||
targets:923   UGACCAACCAGAGAACAUUCC   943

2.5 PREDICTED: Zea mays Ypt/Rab-GAP domain of gyp1p superfamily protein (LOC100216563), transcript variant X1, mRNA NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
© 2017 OPP-ncRBASE. All rights reserved.